genome.fa.s170.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold170
Parameters: 2 7 7 80 10 50 1000
Length:  1632119

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  4  of  11  ( 1308 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660877--660938	29	2.1	29	88	8	90	48	0	0	51	1.00
660879--660952	37	2.0	38	84	7	98	50	0	0	50	1.00
664168--664201	14	2.5	13	95	4	59	41	0	0	58	0.98
664172--664201	13	2.3	13	94	0	51	36	0	0	63	0.95
664810--664855	24	1.9	24	86	0	65	63	2	4	30	1.26
664823--664867	12	3.6	12	84	6	54	66	0	2	31	1.04
665333--665366	15	2.3	15	89	0	50	50	8	2	38	1.49
666252--666301	2	25.0	2	100	0	100	50	0	0	50	1.00
668309--668355	25	2.0	25	83	8	62	46	4	2	46	1.34
668417--668457	17	2.3	19	87	8	59	70	0	0	29	0.87
668417--668462	9	5.2	9	84	10	60	69	0	0	30	0.89
668417--668456	19	2.0	21	85	14	57	72	0	0	27	0.85
668751--668778	2	14.0	2	100	0	56	50	0	0	50	1.00
668892--668952	18	3.4	18	71	8	52	42	6	3	47	1.45
669364--669404	12	3.5	12	75	18	50	46	14	0	39	1.45
670008--670326	96	3.1	101	82	9	387	41	7	7	44	1.59
670962--671063	18	5.4	18	67	23	50	61	0	0	38	0.96
670980--671061	15	5.7	15	64	20	50	58	0	0	41	0.98
670959--671026	34	2.0	33	85	5	91	58	0	0	41	0.98
671020--671083	25	2.5	26	82	5	76	62	0	0	37	0.95
682399--682429	4	7.8	4	100	0	62	77	0	0	22	0.77
685158--685191	3	11.7	3	93	6	61	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685190--685222	3	11.0	3	100	0	66	33	0	0	66	0.92
687290--687323	2	17.0	2	100	0	68	50	0	0	50	1.00
687456--687694	116	2.1	116	96	0	442	34	23	15	27	1.94
691471--691729	89	2.9	88	86	4	351	38	16	14	31	1.88
692750--692805	20	2.8	20	71	15	53	44	0	0	55	0.99
693201--693236	17	2.1	17	89	0	54	55	0	0	44	0.99
696987--697050	16	4.0	17	73	18	57	50	0	0	50	1.00
697028--697097	20	3.4	19	76	20	70	57	0	0	42	0.99
697108--697155	11	4.0	12	86	10	71	60	0	0	39	0.97
697117--697168	6	8.5	6	75	12	52	65	0	0	34	0.93
697108--697179	25	3.0	24	80	11	78	62	0	0	37	0.95
697117--697168	13	4.2	12	83	11	61	65	0	0	34	0.93
697130--697172	14	2.9	14	82	6	50	69	0	0	30	0.88
697398--697428	2	15.5	2	100	0	62	0	51	0	48	1.00
698376--698476	33	3.1	33	82	0	139	21	17	36	23	1.95
698565--699782	405	3.0	403	87	1	1697	33	11	30	24	1.91
705150--705186	2	18.5	2	94	0	65	45	0	2	51	1.15
705573--705600	2	14.0	2	100	0	56	50	0	0	50	1.00
706077--706118	21	2.0	22	85	4	59	71	7	0	21	1.09
710574--710786	114	1.9	115	87	1	320	27	24	22	25	2.00
711725--711772	11	4.5	11	78	5	53	62	0	0	37	0.95
711698--711828	39	3.3	39	75	16	126	59	0	0	39	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711756--711791	18	2.1	18	90	10	58	58	0	0	41	0.98
711839--711868	16	1.9	16	93	6	53	50	0	0	50	1.00
712118--712164	5	9.4	5	85	0	67	53	2	0	44	1.12
712587--712624	13	2.6	15	88	12	53	63	0	2	34	1.09
714541--714675	39	3.5	39	91	0	207	23	17	32	26	1.96
717046--717095	17	2.8	17	84	9	55	52	2	0	46	1.12
717038--717113	40	1.9	40	83	5	100	56	1	1	40	1.16
718286--718347	26	2.4	25	78	5	70	53	0	0	46	1.00
722235--722298	30	2.1	30	82	5	76	40	0	1	57	1.08
722455--722528	29	2.6	29	80	10	89	55	0	0	44	0.99
722526--722569	3	15.0	3	95	4	81	34	0	0	65	0.93
734010--734044	2	17.5	2	93	0	61	0	48	0	51	1.00
735199--735247	23	2.1	23	88	7	73	38	0	0	61	0.96
735199--735261	24	2.7	23	83	11	65	44	0	0	55	0.99
735238--735279	20	2.2	20	91	4	68	54	0	0	45	0.99
742175--742274	28	3.8	26	80	7	105	49	20	7	24	1.73
747614--747664	26	2.0	25	81	11	59	60	0	0	39	0.97
751916--752098	33	5.5	33	85	5	226	41	26	7	25	1.80
751916--752098	100	1.8	100	91	2	305	41	26	7	25	1.80
751916--752098	67	2.7	66	87	1	249	41	26	7	25	1.80
761562--761634	14	5.0	15	69	17	55	60	1	1	36	1.14
761564--761643	16	5.6	14	68	20	51	57	1	1	40	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761588--761663	32	2.3	32	82	8	91	56	2	1	39	1.21
763369--763393	7	3.6	7	100	0	50	40	0	0	60	0.97
763900--763965	22	3.1	21	79	14	64	45	1	0	53	1.09
763924--763965	14	2.9	15	80	16	52	47	0	0	52	1.00
765273--765325	2	26.5	2	100	0	106	0	0	49	50	1.00
765910--766358	160	2.8	160	90	3	672	27	10	18	43	1.82
765910--766364	161	2.8	161	89	3	677	27	10	18	43	1.82
770715--770754	21	2.0	20	90	5	62	42	0	0	57	0.98
777092--777144	23	2.5	21	84	9	63	64	1	1	32	1.15
777514--777545	4	8.0	4	100	0	64	75	0	0	25	0.81
778954--778988	18	1.9	18	88	0	52	22	20	11	45	1.82
779161--779190	2	15.0	2	100	0	60	50	0	0	50	1.00
781748--781811	27	2.4	26	82	10	76	59	0	0	40	0.97
781759--781824	29	2.3	29	87	10	91	57	1	0	40	1.08
782630--782667	10	3.5	11	82	10	51	44	0	0	55	0.99
782629--782678	21	2.5	20	80	6	64	46	0	0	54	1.00
783068--783111	16	2.7	16	85	3	61	45	0	0	54	0.99
783278--783340	5	12.4	5	73	9	56	68	0	0	31	0.90
783234--783340	51	2.1	51	80	3	117	61	0	1	35	1.13
783579--783614	14	2.6	14	91	4	56	47	0	0	52	1.00
783566--783667	47	2.3	43	80	14	100	48	0	0	51	1.00
783728--783767	14	2.9	15	85	10	50	52	0	2	45	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
783772--783809	13	3.0	13	84	3	51	65	0	0	34	0.93
784013--784063	26	2.0	26	92	0	84	37	21	15	25	1.93
786297--786329	2	16.5	2	100	0	66	48	0	0	51	1.00
787397--787422	2	13.0	2	100	0	52	50	0	0	50	1.00
787430--787514	41	2.1	40	88	2	125	32	21	8	37	1.83
788008--788045	2	19.0	2	100	0	76	50	0	0	50	1.00
789686--789744	24	2.5	24	86	5	75	32	5	1	61	1.28
789702--789770	25	2.9	24	85	8	88	33	2	0	63	1.09
790923--790979	17	3.4	16	81	16	55	43	0	1	54	1.10
790953--790996	23	2.0	21	82	8	52	47	0	2	50	1.13
791386--791431	20	2.3	21	75	14	53	41	2	2	54	1.25
791457--791505	21	2.3	20	83	16	64	40	0	0	59	0.98
791826--791871	17	2.6	19	86	10	62	56	0	0	43	0.99
792511--792565	24	2.3	25	75	9	60	56	3	1	38	1.28
794470--794502	17	1.9	17	93	0	57	33	0	0	66	0.92
795119--795160	20	2.0	21	86	4	59	42	0	7	50	1.30
795701--795731	10	2.9	11	90	9	55	35	19	0	45	1.51
796095--796147	20	2.6	20	82	8	54	56	0	0	43	0.99
796391--796421	16	1.9	16	93	0	53	38	0	6	54	1.26
796971--797044	30	2.4	30	93	2	130	51	0	2	45	1.15
802186--802239	16	3.3	17	70	19	51	51	0	0	48	1.00
802598--802626	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811261--811299	15	2.6	15	88	8	53	30	0	0	69	0.89
814563--814631	28	2.5	28	75	15	72	46	1	1	50	1.19
814678--814728	15	3.6	14	76	12	50	47	0	1	50	1.12
815700--815927	16	13.9	16	70	18	98	43	0	2	53	1.19
815691--815932	31	8.1	31	74	15	163	44	0	2	52	1.18
815723--815903	22	7.7	24	67	22	91	43	1	2	53	1.20
815970--816002	5	6.4	5	93	6	57	42	0	0	57	0.98
817535--817583	15	3.3	15	80	8	55	59	2	8	30	1.38
817805--817853	19	2.6	19	77	6	55	36	0	0	63	0.95
817844--817889	17	2.5	19	75	17	51	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11