genome.fa.s170.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold170
Parameters: 2 7 7 80 10 50 1000
Length:  1632119

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1308 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941918--942002	27	3.2	24	76	15	71	36	1	1	61	1.12
942410--942452	18	2.2	18	88	12	59	58	0	0	41	0.98
948521--948590	32	2.2	32	87	5	99	57	0	1	41	1.08
949520--949570	19	2.5	20	90	6	77	66	1	1	29	1.13
954493--954636	24	5.7	24	77	11	110	48	16	6	27	1.72
954493--954604	24	4.5	24	82	5	116	49	14	6	30	1.68
954493--954636	27	5.7	25	79	8	114	48	16	6	27	1.72
955397--955470	28	2.6	28	81	8	71	56	4	0	39	1.18
956832--956865	7	5.0	7	96	3	61	26	0	0	73	0.83
956928--956973	22	2.2	20	84	7	56	50	2	0	47	1.13
956938--957009	28	2.6	27	84	4	81	56	4	1	37	1.27
957187--957223	9	4.1	9	89	0	56	51	2	0	45	1.15
957364--957434	24	3.0	24	93	0	124	28	23	11	36	1.89
959379--959417	6	6.5	6	93	0	60	20	28	17	33	1.96
959784--959831	23	2.1	23	84	7	62	22	4	22	50	1.67
964230--964304	27	2.8	27	93	0	123	26	6	18	48	1.73
965248--965296	24	2.1	23	81	11	55	55	0	0	44	0.99
967333--967375	19	2.3	19	80	8	52	51	0	0	48	1.00
967947--967994	2	24.0	2	95	0	87	52	0	0	47	1.00
969477--969513	2	18.5	2	100	0	74	51	0	0	48	1.00
970225--970260	10	3.5	10	88	7	54	33	0	0	66	0.92
970225--970264	21	2.0	20	90	5	62	35	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972741--972796	26	2.1	27	83	9	71	51	0	1	46	1.11
972793--972845	19	2.9	18	81	10	54	39	0	1	58	1.09
972816--972851	17	2.1	18	89	5	56	44	0	0	55	0.99
972955--973012	28	2.1	28	83	6	73	63	8	1	25	1.32
973569--973619	22	2.4	22	87	9	70	68	7	1	21	1.25
973720--973778	23	2.5	24	83	5	66	69	1	3	25	1.13
973815--973865	16	3.2	16	78	13	61	76	1	0	21	0.88
974002--974093	18	5.2	18	69	20	61	52	4	1	42	1.28
974061--974098	18	2.2	17	86	9	51	52	0	2	44	1.14
974073--974180	44	2.4	44	87	3	162	42	4	7	45	1.53
975107--975151	21	2.2	21	88	4	65	46	4	8	40	1.55
976048--976152	34	3.0	34	85	8	156	40	32	0	25	1.62
981665--981718	20	2.6	20	82	5	63	57	0	0	42	0.98
981668--981750	36	2.3	35	82	12	89	55	0	0	44	0.99
981746--981795	26	2.0	24	84	7	64	48	4	0	48	1.20
981991--982027	9	3.9	9	86	13	56	56	2	0	40	1.13
981998--982030	11	3.2	11	91	8	52	54	6	0	39	1.25
982043--982110	16	4.2	16	74	20	61	45	0	0	54	0.99
982060--982116	13	3.3	19	68	31	56	47	0	0	52	1.00
982053--982129	32	2.4	32	86	6	102	44	0	0	55	0.99
982053--982116	32	2.0	33	90	6	105	46	0	0	53	1.00
982170--982223	22	2.3	24	78	6	58	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
982530--982632	21	4.6	21	68	19	73	49	0	0	49	1.07
982518--982683	70	2.4	70	97	2	318	48	1	0	50	1.08
982529--982661	16	7.9	16	70	10	95	48	1	0	49	1.10
982565--982693	21	6.9	19	69	27	82	46	1	0	51	1.10
982718--982751	6	5.7	6	89	0	50	52	0	0	47	1.00
982977--983004	3	9.3	3	100	0	56	35	0	0	64	0.94
982986--983054	35	2.0	35	100	0	138	49	4	2	43	1.37
983723--983769	17	2.5	19	77	22	55	36	2	0	61	1.08
983736--983771	17	2.1	17	94	0	63	38	0	0	61	0.96
986178--986212	16	2.1	17	89	5	54	37	0	5	57	1.23
986271--986344	21	3.5	21	75	10	62	45	5	1	47	1.34
986334--986402	29	2.4	29	76	7	70	60	2	0	36	1.11
986704--986783	40	2.0	40	85	4	108	45	0	0	55	0.99
986714--986779	33	1.9	35	85	11	93	45	0	0	54	0.99
987036--987087	25	2.1	25	81	0	59	30	1	3	63	1.23
987128--987222	9	10.8	9	75	17	76	27	1	0	71	0.93
987128--987243	28	4.3	26	78	17	87	28	1	0	68	1.05
987146--987221	17	4.5	17	76	18	79	25	1	0	73	0.91
987154--987222	31	2.1	34	89	7	108	23	1	0	75	0.89
987154--987212	13	4.8	13	74	19	56	23	0	0	76	0.79
987130--987243	31	3.9	27	77	19	104	28	1	0	68	1.05
987432--987469	17	2.2	17	95	0	67	39	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
987419--987460	11	3.8	11	81	9	50	33	0	2	64	1.07
987688--987729	15	2.8	15	82	10	50	50	4	2	42	1.36
987931--988004	16	4.4	18	69	24	54	37	0	0	62	0.96
988639--988699	26	2.5	26	81	7	74	62	9	9	18	1.53
988699--988760	32	1.9	33	86	3	90	59	3	0	37	1.13
988715--988767	20	2.5	21	75	6	54	58	1	0	39	1.09
989414--989505	20	4.6	20	72	1	58	38	2	1	58	1.17
989929--989970	22	1.9	22	85	9	59	35	7	9	47	1.64
990081--990124	20	2.1	21	83	4	54	45	2	0	52	1.13
994864--994903	17	2.4	17	87	8	55	47	0	0	52	1.00
995272--995337	26	2.4	27	80	10	62	51	1	0	46	1.10
995274--995328	14	3.7	15	71	9	51	52	0	0	47	1.00
996133--996174	21	2.0	21	95	0	75	52	7	0	40	1.29
996158--996192	17	2.0	18	94	5	63	45	0	0	54	0.99
996346--997776	447	3.2	439	77	8	1322	44	7	5	43	1.54
997626--997666	19	2.1	20	86	4	57	60	2	0	36	1.10
996359--997917	451	3.5	440	76	8	1374	43	7	5	43	1.54
998270--998367	18	5.3	18	69	21	60	39	3	4	53	1.36
998396--998432	19	1.9	19	94	0	65	51	5	5	37	1.48
998489--998575	19	4.8	18	72	14	65	42	1	2	54	1.20
998517--998593	19	4.1	19	76	17	63	42	1	2	53	1.23
998947--998974	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1003591--1003625	2	17.5	2	100	0	70	0	48	0	51	1.00
1005157--1005193	2	18.5	2	100	0	74	51	0	0	48	1.00
1006022--1006057	3	12.0	3	100	0	72	33	0	0	66	0.92
1010991--1011015	2	12.5	2	100	0	50	0	48	0	52	1.00
1011833--1011861	2	14.5	2	100	0	58	51	0	0	48	1.00
1016290--1016580	144	2.0	145	89	0	449	31	14	22	32	1.93
1017350--1017387	2	19.0	2	100	0	76	0	0	50	50	1.00
1017947--1018041	47	2.0	47	100	0	190	29	2	25	43	1.66
1021512--1021554	20	2.2	20	100	0	86	27	13	9	48	1.73
1027873--1027914	21	2.0	21	85	0	57	50	2	4	42	1.36
1028612--1028658	20	2.3	20	96	0	85	48	0	2	48	1.13
1028787--1028842	26	2.2	26	100	0	112	10	39	16	33	1.83
1029085--1029257	18	10.2	18	68	23	76	38	0	0	60	1.06
1029125--1029199	16	4.5	17	74	21	70	40	0	0	60	0.97
1029085--1029221	50	2.7	48	79	14	143	38	0	0	61	0.96
1029077--1029197	31	3.9	31	73	23	110	38	0	0	61	0.96
1035288--1035446	79	2.0	79	98	0	309	19	19	15	45	1.85
1037446--1037476	3	10.3	3	100	0	62	67	0	0	32	0.91
1037764--1037808	21	2.0	23	87	8	67	51	0	8	40	1.33
1037926--1037982	21	2.7	21	76	13	62	49	0	0	50	1.00
1038244--1038289	21	2.1	21	84	11	58	65	0	0	34	0.93
1038244--1038298	19	2.7	21	83	8	60	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041711--1041740	10	2.9	10	95	5	51	3	6	0	90	0.56
1045888--1045920	2	16.5	2	100	0	66	0	48	0	51	1.00
1047380--1047442	24	2.8	23	77	18	69	47	0	0	52	1.00
1047382--1047497	43	2.7	42	76	12	101	47	1	0	50	1.17
1047460--1047505	19	2.4	18	82	13	56	41	2	0	56	1.11
1047456--1047507	20	2.6	19	87	9	68	42	1	0	55	1.10
1047885--1047923	12	3.2	12	85	3	51	51	0	0	48	1.00
1047880--1047915	18	1.9	19	88	5	56	44	0	0	55	0.99
1047994--1048081	45	2.0	45	82	8	108	45	0	3	51	1.18
1048031--1048118	26	3.4	25	70	22	67	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11