genome.fa.s170.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold170
Parameters: 2 7 7 80 10 50 1000
Length:  1632119

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  9  of  11  ( 1308 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1244034--1244071	17	2.1	17	90	9	58	55	0	0	44	0.99
1246297--1246424	65	2.0	64	80	11	145	45	4	3	46	1.39
1246466--1246534	29	2.3	30	90	5	104	55	0	2	42	1.15
1246850--1246966	34	3.5	33	88	5	164	26	6	26	40	1.81
1251380--1251564	34	5.5	34	88	0	264	25	7	26	40	1.82
1252232--1252274	19	2.3	19	83	0	50	27	4	9	58	1.49
1252560--1252604	21	2.1	21	83	0	54	46	6	0	46	1.29
1252913--1252956	8	5.9	8	86	13	51	61	0	0	38	0.96
1262680--1262746	19	3.4	18	74	14	53	49	0	0	50	1.00
1262720--1262781	21	3.0	21	74	6	63	51	0	0	48	1.00
1262739--1262790	15	3.4	15	79	12	52	57	0	0	42	0.98
1262947--1263011	12	5.3	12	73	14	53	56	0	0	43	0.99
1262956--1263006	25	2.0	26	88	3	77	54	0	0	45	0.99
1263194--1263221	14	2.0	14	100	0	56	64	0	0	35	0.94
1263179--1263220	22	1.9	22	90	9	68	64	0	0	35	0.94
1264199--1264226	2	14.0	2	100	0	56	0	50	0	50	1.00
1266236--1266277	20	2.0	21	86	9	59	52	4	0	42	1.22
1270772--1270801	10	3.0	10	90	0	51	66	0	0	33	0.92
1274683--1274712	2	15.0	2	92	0	51	0	53	0	46	1.00
1281295--1281323	13	2.1	14	93	6	51	27	0	0	72	0.85
1285897--1286057	50	3.2	50	80	5	209	30	16	19	33	1.94
1286303--1286340	19	2.0	19	89	0	58	28	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1287120--1287156	18	1.9	19	89	10	58	62	2	21	13	1.44
1291391--1291434	19	2.4	19	85	14	65	59	0	0	40	0.98
1291391--1291444	19	2.9	19	78	13	60	59	0	0	40	0.98
1293475--1293533	31	1.9	31	82	6	75	35	0	1	62	1.05
1295021--1295074	29	1.9	29	81	7	67	50	0	1	48	1.11
1295181--1295233	21	2.5	21	81	9	54	62	0	0	37	0.96
1295578--1295612	15	2.2	16	90	10	54	74	0	2	22	0.95
1295927--1295986	16	3.9	16	73	4	61	53	0	1	45	1.10
1295919--1295991	32	2.2	32	80	9	85	56	0	1	42	1.08
1295929--1296010	38	2.2	37	80	10	96	53	1	1	43	1.16
1296247--1296275	13	2.3	13	94	5	51	68	0	0	31	0.89
1296245--1296297	26	2.0	27	82	10	65	69	0	1	28	0.99
1296440--1296483	17	2.6	18	89	10	67	54	0	0	45	0.99
1296851--1296920	11	6.4	11	75	6	52	32	1	0	65	1.01
1296884--1296927	22	2.0	23	90	4	72	31	4	0	63	1.14
1296881--1296945	22	3.0	22	71	22	57	32	4	0	63	1.15
1296887--1296944	22	2.5	22	81	10	64	31	3	0	65	1.09
1299343--1299396	22	2.5	23	75	24	64	46	0	0	53	1.00
1299698--1299762	26	2.4	26	80	10	69	38	4	0	56	1.20
1299715--1299769	8	6.8	8	75	17	51	36	1	0	61	1.06
1299923--1299975	27	2.0	27	81	7	63	49	0	0	50	1.00
1299952--1300000	19	2.4	21	86	10	66	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1299928--1300033	30	3.6	30	70	10	78	53	0	0	46	1.00
1299975--1300035	31	2.0	30	81	9	70	54	0	0	45	1.00
1301515--1301602	16	5.2	17	80	15	78	37	0	0	62	0.95
1301552--1301615	32	2.0	32	84	6	85	40	3	0	56	1.15
1301636--1301701	16	3.7	18	78	13	66	31	0	1	66	1.01
1301627--1301717	28	3.4	27	77	11	91	36	0	1	62	1.02
1301666--1301711	20	2.3	20	84	0	56	36	0	0	63	0.95
1301888--1301919	2	16.0	2	93	0	55	46	0	0	53	1.00
1303537--1303568	2	16.0	2	100	0	64	50	0	0	50	1.00
1304790--1304841	19	2.8	18	82	5	68	34	0	1	63	1.06
1305184--1305214	2	15.5	2	100	0	62	48	0	0	51	1.00
1306367--1306398	16	1.9	17	93	6	57	50	6	18	25	1.70
1306968--1307119	50	3.0	50	80	7	173	38	17	13	29	1.89
1311451--1311686	50	4.7	50	88	0	328	33	21	16	28	1.95
1313411--1313452	23	1.9	23	85	9	61	50	0	0	50	1.00
1313865--1313921	11	5.2	11	77	8	53	49	0	0	50	1.00
1313900--1313926	13	2.1	13	100	0	54	48	0	0	51	1.00
1313988--1314026	20	2.0	20	85	5	53	53	0	0	46	1.00
1314019--1314049	15	2.1	15	93	0	53	35	0	0	64	0.94
1317767--1317950	91	2.0	92	97	2	352	38	11	27	22	1.89
1320843--1320889	5	9.0	5	78	17	51	25	2	0	72	0.96
1321413--1321473	2	30.5	2	96	0	113	49	1	0	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1323190--1323244	18	3.2	18	66	10	51	47	3	16	32	1.64
1323398--1323527	59	2.2	59	81	0	152	36	10	16	36	1.84
1325144--1325182	1	39.0	1	89	0	60	0	5	0	94	0.29
1325144--1325182	13	3.1	13	96	3	71	0	5	0	94	0.29
1325140--1325181	19	2.2	20	95	4	77	0	7	0	92	0.37
1332067--1332099	3	11.0	3	100	0	66	66	0	0	33	0.92
1332895--1332924	2	15.0	2	100	0	60	50	0	0	50	1.00
1335202--1335245	5	8.0	6	80	16	51	31	2	0	65	1.05
1335202--1335244	11	4.0	11	82	14	54	32	2	0	65	1.06
1336231--1336311	41	2.0	41	87	4	119	29	19	7	43	1.78
1336577--1336612	16	2.2	17	90	5	56	44	0	0	55	0.99
1337211--1337260	15	3.3	15	80	0	55	28	12	40	20	1.87
1337258--1337292	15	2.3	15	90	0	52	17	14	37	31	1.89
1337621--1337653	2	17.0	2	87	6	50	54	0	0	45	0.99
1339595--1339636	21	2.0	21	86	13	61	40	0	0	59	0.97
1339539--1339919	190	2.0	190	100	0	762	42	10	5	40	1.63
1339785--1339826	21	2.0	21	86	13	61	40	0	0	59	0.97
1359757--1359796	20	2.0	20	90	0	62	50	0	0	50	1.00
1361002--1361056	21	2.6	21	80	11	60	58	0	0	41	0.98
1361009--1361056	21	2.2	23	85	7	64	58	0	0	41	0.98
1361860--1361907	25	1.9	25	83	8	62	39	0	0	60	0.97
1369558--1369597	21	2.0	19	85	9	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1369576--1369603	14	2.0	14	100	0	56	50	0	0	50	1.00
1372038--1372074	2	18.5	2	100	0	74	48	0	0	51	1.00
1372370--1372431	28	2.1	30	82	5	74	58	3	1	37	1.24
1376681--1376711	2	15.5	2	93	0	53	54	0	45	0	0.99
1376818--1376871	21	2.7	20	77	8	56	74	11	5	9	1.22
1376818--1376871	20	2.7	19	78	13	54	74	11	5	9	1.22
1377264--1377330	22	3.0	23	70	14	68	46	1	0	52	1.09
1377797--1377860	21	3.2	20	72	14	60	57	0	0	42	0.98
1389899--1389961	33	1.9	33	84	12	85	58	1	3	36	1.23
1389912--1389971	24	2.5	23	79	15	59	58	0	1	40	1.08
1389955--1390014	25	2.6	23	72	12	59	65	0	0	35	0.93
1391504--1391528	6	4.2	6	100	0	50	16	16	36	32	1.90
1392291--1392347	29	2.1	29	83	9	75	57	0	1	40	1.09
1392587--1392677	10	8.8	10	69	28	50	41	1	0	57	1.06
1392640--1392681	14	2.9	14	86	10	57	35	0	0	64	0.94
1392653--1392678	12	2.2	12	100	0	52	30	0	0	69	0.89
1393626--1393651	2	13.0	2	100	0	52	50	0	0	50	1.00
1394091--1394158	20	3.3	20	72	10	66	38	5	1	54	1.34
1394106--1394138	16	2.0	17	88	5	50	36	6	3	54	1.41
1394304--1394344	17	2.3	19	87	8	59	65	0	0	34	0.93
1395008--1395044	2	18.5	2	100	0	74	48	0	0	51	1.00
1397043--1397084	22	1.9	22	90	9	68	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1402604--1402650	24	2.0	24	83	8	60	38	4	0	57	1.18
1403788--1403834	15	2.8	17	87	9	62	46	4	0	48	1.21
1403793--1403835	17	2.5	17	84	3	59	44	4	0	51	1.22
1406998--1407037	19	2.1	19	90	0	62	35	0	2	62	1.09
1408257--1408307	21	2.4	21	84	15	70	56	0	0	43	0.99
1408221--1408481	142	1.8	142	97	0	495	49	3	0	45	1.25
1408399--1408449	21	2.4	21	84	15	70	56	0	0	43	0.99
1412893--1412944	16	3.2	16	73	13	52	50	0	3	46	1.20
1412996--1413035	21	1.9	21	85	10	55	37	0	0	62	0.95
1412973--1413093	49	2.4	51	81	11	128	47	0	0	52	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11