genome.fa.s181.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold181
Parameters: 2 7 7 80 10 50 1000
Length:  968729

Tables:   1   2   3   4   5   6   7   

This is table  1  of  7  ( 727 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2125--2162	2	19.0	2	100	0	76	50	50	0	0	1.00
4313--4347	7	4.9	7	89	6	52	80	0	2	17	0.84
9403--9436	11	3.0	11	83	8	50	52	0	0	47	1.00
9396--9444	13	3.8	13	81	8	55	51	0	0	48	1.00
9556--9597	18	2.4	18	84	7	61	54	0	0	45	0.99
9549--9597	18	2.6	19	78	12	57	53	0	0	46	1.00
9556--9606	17	3.0	16	81	18	59	52	0	0	47	1.00
9556--9607	16	3.1	15	77	20	50	53	0	0	46	1.00
9815--9854	18	2.3	17	84	16	55	40	2	2	55	1.27
10760--10789	14	2.1	14	93	0	51	40	3	0	56	1.16
12529--12685	11	15.9	9	69	23	52	47	0	1	51	1.08
12538--12623	20	4.1	21	71	14	70	46	0	2	51	1.13
12539--12629	42	2.2	41	80	9	105	47	0	2	50	1.13
12614--12682	15	4.5	15	77	13	61	47	0	0	52	1.00
12574--12682	58	1.9	54	83	10	139	48	0	0	51	1.00
12623--12698	31	2.4	33	82	12	88	48	2	0	48	1.15
12617--12683	16	4.2	16	78	17	70	46	0	0	53	1.00
12646--12696	16	3.3	15	76	15	50	49	3	0	47	1.20
12657--12699	15	2.8	15	82	6	50	51	4	0	44	1.22
13313--13346	17	1.9	17	88	5	50	50	0	0	50	1.00
13343--13382	22	1.9	20	90	10	62	62	0	0	37	0.95
13313--13424	51	2.2	50	81	9	120	50	0	0	48	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13665--13720	13	4.6	12	82	10	69	58	0	1	39	1.08
14477--14537	10	5.8	11	71	21	51	40	0	0	59	0.98
14753--14793	13	3.2	13	80	16	50	68	0	0	31	0.90
14758--14800	17	2.4	18	84	3	52	65	0	0	34	0.93
15155--15224	28	2.5	27	76	13	70	42	2	0	54	1.15
17056--17086	6	5.2	6	100	0	62	32	0	0	67	0.91
17571--17613	23	1.9	23	85	4	61	67	0	2	30	1.03
18094--18133	18	2.2	18	86	4	53	47	0	0	52	1.00
18365--18404	20	2.0	21	90	5	64	45	0	0	55	0.99
20127--20165	2	19.5	2	100	0	78	48	0	0	51	1.00
35314--35385	4	18.0	4	91	0	117	27	0	25	47	1.52
35442--35475	17	2.0	17	100	0	68	17	0	17	64	1.29
38792--38840	25	1.9	26	91	4	82	53	14	18	14	1.74
41997--42051	21	2.6	21	86	11	85	29	16	20	34	1.94
47190--47247	16	3.4	17	75	25	59	44	1	0	53	1.10
47564--47593	12	2.5	12	88	0	51	56	0	0	43	0.99
47612--47654	18	2.4	18	81	14	54	53	0	0	46	1.00
48486--48530	18	2.5	18	82	17	58	75	0	0	24	0.80
48486--48530	23	2.0	23	91	8	74	75	0	0	24	0.80
48527--48620	13	7.4	13	68	24	58	53	1	0	45	1.07
48522--48596	21	3.8	21	72	18	72	57	1	0	41	1.07
48506--48637	52	2.5	51	79	12	142	59	0	0	40	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48671--48737	28	2.3	30	82	10	86	56	0	0	43	0.99
54046--54074	12	2.3	13	94	5	51	34	0	0	65	0.93
54203--54240	16	2.4	17	82	13	53	44	2	2	50	1.30
55229--55281	18	3.1	16	82	15	54	49	0	0	50	1.00
55232--55305	39	1.9	38	81	13	89	52	0	0	47	1.00
55275--55458	76	2.5	74	78	14	193	48	1	1	48	1.15
55435--55513	9	8.9	9	76	16	60	67	0	0	32	0.91
55420--55530	50	2.3	49	75	12	113	62	0	0	37	0.96
55444--55523	19	4.6	17	68	23	51	68	0	0	31	0.90
55432--55516	26	3.3	27	76	21	92	65	0	0	34	0.93
56387--56439	22	2.4	22	100	0	106	43	3	0	52	1.19
56896--56939	16	2.8	15	80	10	52	75	0	2	22	0.92
57642--57695	28	2.0	28	82	13	69	44	1	0	53	1.11
57651--57713	22	2.9	22	81	9	76	44	0	0	55	0.99
57681--57730	7	7.1	7	82	14	59	40	0	0	60	0.97
57688--57813	46	2.8	44	74	13	121	46	0	0	53	1.00
57684--57750	14	5.1	14	70	25	58	43	0	0	56	0.99
57897--57961	30	2.1	32	82	8	80	52	0	0	47	1.00
57900--57962	29	2.2	29	75	10	67	53	0	0	46	1.00
73674--73733	4	15.0	4	92	0	102	28	0	23	48	1.51
74033--74086	23	2.4	23	87	6	76	38	12	7	40	1.72
80627--80750	52	2.4	51	94	1	212	28	17	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80627--80770	52	2.8	51	88	5	202	29	17	18	34	1.94
80759--80783	13	1.9	13	100	0	50	36	16	16	32	1.90
80824--80890	33	2.0	33	88	0	98	40	13	11	34	1.81
80846--80870	13	1.9	13	100	0	50	32	16	16	36	1.90
81889--82209	49	6.6	49	87	6	458	31	17	25	25	1.97
81936--82206	140	1.9	140	94	0	479	30	17	25	26	1.97
82235--82360	30	4.3	29	83	7	130	23	17	28	30	1.97
82219--82360	30	4.8	29	81	7	90	22	19	28	29	1.98
82281--82364	29	2.8	30	87	3	125	28	20	22	28	1.98
83802--83919	1	118.0	1	79	0	101	2	3	6	87	0.73
83802--83919	47	2.5	47	86	10	152	2	3	6	87	0.73
83804--83919	40	2.9	38	80	8	124	2	3	6	87	0.74
93596--93622	10	2.7	10	100	0	54	77	22	0	0	0.76
97757--97880	52	2.4	51	94	1	212	28	17	18	35	1.94
97757--97900	52	2.8	51	88	5	202	29	17	18	34	1.94
97889--97913	13	1.9	13	100	0	50	36	16	16	32	1.90
97954--98020	33	2.0	33	88	0	98	40	13	11	34	1.81
97976--98000	13	1.9	13	100	0	50	32	16	16	36	1.90
99411--99464	23	2.4	23	87	6	76	38	12	7	40	1.72
102765--102813	25	1.9	26	91	4	82	53	14	18	14	1.74
102917--102949	14	2.3	15	89	5	50	45	3	0	51	1.16
105982--106036	21	2.6	21	94	0	92	29	18	21	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107918--107980	32	2.0	32	87	6	92	42	15	14	26	1.86
110187--110388	78	2.6	77	81	7	219	34	11	24	29	1.91
110240--110406	78	2.1	79	86	4	239	31	14	25	27	1.95
110361--110434	28	2.6	28	97	0	139	28	20	29	21	1.98
110283--110620	107	3.2	107	87	2	477	31	14	26	26	1.95
110471--110537	28	2.4	28	100	0	134	29	14	28	26	1.96
110486--110697	79	2.7	75	80	8	244	33	14	24	27	1.94
110389--110883	186	2.6	187	85	4	660	33	14	24	27	1.94
110659--110727	28	2.5	28	82	0	93	36	21	17	24	1.95
110577--110806	107	2.1	107	84	2	309	34	15	22	27	1.94
110685--111069	159	2.5	157	81	8	430	34	12	23	29	1.92
110682--111069	78	5.0	78	81	7	398	34	13	23	29	1.92
114268--114902	62	10.4	58	80	9	485	27	18	26	26	1.98
114269--114868	123	4.9	118	76	10	521	27	19	26	27	1.99
118617--118740	52	2.4	51	94	1	212	28	17	18	35	1.94
118617--118760	52	2.8	51	88	5	202	29	17	18	34	1.94
118749--118773	13	1.9	13	100	0	50	36	16	16	32	1.90
118814--118880	33	2.0	33	88	0	98	40	13	11	34	1.81
118836--118860	13	1.9	13	100	0	50	32	16	16	36	1.90
119822--120162	49	6.7	52	80	10	311	31	16	24	27	1.97
119879--120167	98	2.9	100	82	12	362	30	16	25	26	1.97
120155--120243	30	3.0	30	74	19	96	16	16	35	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120155--120249	27	3.3	27	80	12	100	15	16	35	31	1.91
120155--120282	57	2.2	60	84	4	163	20	17	32	28	1.96
120183--120308	30	4.3	29	85	7	139	23	17	29	30	1.97
120229--120312	29	2.8	30	89	3	134	27	20	23	28	1.99
121751--121887	1	137.0	1	79	0	130	1	1	8	88	0.64
121751--121885	15	8.4	16	80	7	150	1	1	8	88	0.65
125461--125493	1	33.0	1	100	0	66	100	0	0	0	0.00
131602--131628	10	2.7	10	100	0	54	77	22	0	0	0.76
135763--135886	52	2.4	51	94	1	212	28	17	18	35	1.94
135763--135906	52	2.8	51	88	5	202	29	17	18	34	1.94

Tables:   1   2   3   4   5   6   7