genome.fa.s181.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold181
Parameters: 2 7 7 80 10 50 1000
Length:  968729

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 727 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270759--270794	18	1.9	19	88	5	56	19	8	13	58	1.61
271601--271670	34	2.1	33	84	7	88	58	1	0	40	1.07
271601--271676	33	2.3	32	82	8	82	57	2	0	39	1.12
277005--277131	68	1.9	68	93	0	218	44	2	7	45	1.43
277483--277512	14	2.1	15	93	6	53	50	13	6	30	1.67
278143--278211	20	3.4	20	78	9	61	62	2	0	34	1.10
278765--278807	23	2.0	23	86	9	63	55	0	0	44	0.99
279044--279115	21	3.5	20	77	18	76	38	0	0	61	0.96
279279--279310	3	10.7	3	100	0	64	0	31	34	34	1.58
279306--279360	24	2.3	24	81	6	67	7	16	40	36	1.76
279282--279360	6	13.2	6	82	0	50	5	21	37	35	1.76
279876--279914	6	6.8	6	85	11	55	64	0	0	35	0.94
280441--280479	15	2.5	15	83	4	51	33	7	7	51	1.59
281479--281522	16	2.6	16	82	7	52	34	0	2	63	1.07
281773--281842	11	6.5	11	70	6	54	35	0	0	64	0.94
281759--281826	17	3.7	18	70	18	52	35	0	0	64	0.94
281768--281817	22	2.2	22	85	3	64	34	0	0	66	0.92
281794--281843	15	3.2	16	81	18	61	38	0	0	62	0.96
281779--281834	14	4.0	14	77	9	60	35	0	0	64	0.94
281759--281831	37	2.0	37	84	7	96	34	0	0	65	0.93
281830--281872	20	2.2	20	83	8	52	44	0	2	53	1.13
281881--281972	32	2.7	32	86	11	114	46	0	1	52	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281948--281988	20	2.1	19	86	4	55	34	0	0	65	0.93
282161--282212	18	2.7	20	80	11	54	46	0	0	53	1.00
282174--282231	18	3.1	20	78	9	61	50	0	0	50	1.00
282198--282278	33	2.5	34	80	13	82	46	0	0	53	1.00
282295--282337	16	2.8	16	85	3	61	58	2	0	39	1.11
282488--282533	20	2.4	20	86	13	62	43	2	4	50	1.34
282500--282591	42	2.4	35	74	20	85	45	0	2	52	1.13
282566--282613	19	2.4	20	79	6	53	56	2	2	39	1.23
283404--283447	22	2.0	22	90	0	70	22	0	2	75	0.92
283416--283472	18	3.4	17	76	13	64	24	0	1	73	0.92
284254--284294	10	4.0	10	87	12	57	65	0	2	31	1.05
284290--284339	19	2.4	22	83	16	70	46	0	2	52	1.12
284342--284380	20	2.0	19	85	14	53	46	0	0	53	1.00
284850--284879	11	2.7	11	89	0	51	83	0	16	0	0.65
284924--284955	16	2.0	16	93	0	55	62	0	3	34	1.11
284950--285031	37	2.2	37	82	0	101	43	1	3	51	1.27
285345--285393	2	25.0	2	86	12	66	44	0	2	53	1.12
286645--286691	12	3.3	15	74	20	55	51	0	0	48	1.00
286625--286704	27	2.8	28	72	14	74	53	1	0	45	1.08
288984--289031	26	2.0	25	84	15	66	54	0	0	45	0.99
290076--290137	25	2.6	23	76	23	58	56	0	0	43	0.99
290070--290121	26	2.0	27	85	7	72	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290080--290128	25	1.9	25	83	4	62	55	0	0	44	0.99
290109--290148	17	2.5	17	92	8	66	65	0	0	35	0.93
290108--290148	16	2.6	16	85	11	57	65	0	0	34	0.93
290098--290179	28	2.9	28	71	8	76	59	0	0	40	0.97
290502--290534	17	1.9	17	93	0	57	51	0	3	45	1.16
291123--291178	16	3.4	18	76	16	59	39	0	0	60	0.97
293407--293456	22	2.3	21	86	13	66	46	0	0	54	1.00
293395--293456	11	5.6	11	78	18	51	46	1	0	51	1.10
293763--293787	13	1.9	13	100	0	50	44	0	0	56	0.99
294185--294241	17	3.5	17	71	22	50	56	0	0	43	0.99
294171--294245	32	2.3	34	86	6	109	57	0	0	42	0.98
294894--294931	14	2.9	14	88	11	62	60	0	0	39	0.97
294960--294990	15	2.1	15	93	0	53	54	0	0	45	0.99
303196--303229	16	2.1	16	88	0	50	29	38	8	23	1.85
305460--305525	18	3.6	19	82	15	77	54	0	0	45	0.99
305451--305525	18	4.3	18	70	12	68	53	0	0	46	1.00
305657--305701	17	2.9	16	78	18	51	28	0	0	71	0.87
305699--305728	15	2.0	15	93	0	51	50	0	0	50	1.00
305819--305877	26	2.3	26	82	5	66	61	0	0	38	0.96
305933--305975	14	2.9	15	83	16	54	37	2	0	60	1.10
308784--308813	12	2.5	12	94	0	51	36	0	0	63	0.95
309996--310039	22	2.0	22	86	8	63	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309963--310063	38	2.6	38	76	14	98	55	0	0	42	1.13
310408--310460	22	2.4	23	84	12	67	37	0	0	62	0.96
312407--312457	24	2.0	26	85	7	70	58	0	0	41	0.98
313195--313236	2	21.0	2	100	0	84	50	0	0	50	1.00
313373--313412	11	3.6	11	80	12	55	52	0	2	45	1.14
313764--313788	2	12.5	2	100	0	50	48	0	0	52	1.00
314437--314493	23	2.5	22	72	10	53	43	1	0	54	1.10
316124--316171	22	2.2	22	82	14	55	45	0	2	52	1.12
316404--316458	21	2.6	21	77	5	58	58	0	0	41	0.98
316861--316963	50	2.1	50	94	0	179	37	12	37	11	1.80
317029--317081	26	2.0	26	100	0	106	24	15	30	30	1.95
318932--318967	2	17.5	2	94	5	63	47	2	0	50	1.15
318938--319007	8	8.6	8	77	14	54	44	1	0	54	1.09
319372--319406	2	17.5	2	100	0	70	51	0	0	48	1.00
325359--325406	2	24.0	2	100	0	96	0	50	0	50	1.00
327672--327732	22	2.8	23	80	7	65	44	0	0	55	0.99
327716--327797	33	2.5	32	83	13	105	41	1	1	56	1.15
327786--327833	23	2.1	22	84	3	60	22	0	2	75	0.91
329179--329228	21	2.3	22	79	6	66	50	0	0	50	1.00
329620--329652	16	2.1	15	94	5	57	54	0	0	45	0.99
330153--330210	28	2.1	28	83	6	73	51	0	0	48	1.00
330153--330210	29	2.1	29	87	6	84	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331208--331277	30	2.4	30	85	2	88	54	0	7	38	1.28
332086--332219	67	2.0	67	97	0	250	17	26	22	34	1.96
333745--333856	32	3.8	29	74	13	95	38	1	1	58	1.19
333753--333817	17	3.8	18	70	24	50	43	1	1	53	1.19
335684--336006	161	2.0	161	100	0	646	35	9	12	42	1.76
336667--336724	20	2.9	19	82	12	55	43	0	1	55	1.10
337403--337453	27	1.9	26	84	11	68	47	0	0	52	1.00
337412--337480	16	4.3	15	69	20	50	49	0	0	50	1.00
339089--339120	15	2.1	16	94	5	57	50	0	0	50	1.00
339073--339153	37	2.2	38	86	6	112	50	3	0	45	1.19
339095--339144	22	2.3	22	89	0	73	50	2	0	48	1.12
339096--339157	31	2.0	30	84	12	81	53	3	0	43	1.17
339094--339158	22	3.0	22	78	13	71	52	3	0	44	1.16
340482--340542	22	2.7	23	80	12	63	49	1	1	47	1.21
340810--340853	17	2.6	17	76	16	56	47	0	0	52	1.00
345505--345564	29	2.1	29	87	3	86	65	1	1	31	1.13
346307--346341	18	1.9	18	88	0	52	48	5	0	45	1.26
346776--346845	24	3.2	20	78	20	70	65	0	0	34	0.93
346774--346841	26	2.7	25	82	10	84	64	0	0	35	0.94
346785--346854	14	5.2	13	73	13	52	64	1	0	34	1.03
347818--347877	29	2.1	28	81	9	68	46	0	1	51	1.10
348350--348404	20	2.8	20	85	0	65	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348370--348430	27	2.2	27	85	2	77	37	0	0	62	0.96
348389--348438	14	3.6	14	74	15	50	30	2	0	68	1.01
348388--348440	27	2.0	26	85	14	72	30	1	0	67	1.01
348830--348957	32	3.9	32	72	13	93	59	0	1	38	1.13
348908--348957	13	2.9	19	67	32	58	52	0	0	48	1.00
350283--350337	25	2.2	26	84	15	71	29	0	0	70	0.87
350282--350350	21	3.3	20	76	13	59	27	1	0	71	0.95
352188--352220	2	17.0	2	87	6	50	48	3	0	48	1.17
353081--353112	2	16.5	2	93	6	57	46	0	0	53	1.00
353117--353146	2	15.0	2	100	0	60	50	0	50	0	1.00

Tables:   1   2   3   4   5   6   7