genome.fa.s181.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold181
Parameters: 2 7 7 80 10 50 1000
Length:  968729

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 727 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717863--717901	18	2.2	18	95	0	69	74	7	0	17	1.05
718222--718304	29	2.8	30	70	1	80	55	4	6	33	1.46
720418--720547	64	2.0	64	95	0	233	32	12	19	36	1.89
723002--723032	13	2.3	14	94	5	55	0	6	3	90	0.55
734745--734790	21	2.4	19	89	10	67	36	0	23	39	1.55
734753--734802	21	2.4	21	93	0	82	38	0	24	38	1.56
738563--738611	11	4.6	10	79	20	55	75	0	2	22	0.90
738563--738619	21	2.7	22	82	12	66	73	0	1	24	0.92
738552--738611	11	5.4	11	77	15	52	73	0	1	25	0.93
738599--738678	24	3.2	24	74	13	63	53	1	1	43	1.16
738636--738681	17	2.6	19	83	13	62	47	2	2	47	1.26
746469--746506	15	2.5	15	80	16	51	39	2	0	57	1.12
748540--748569	15	2.0	15	100	0	60	20	26	20	33	1.97
750344--750381	20	1.9	19	89	5	58	2	28	5	63	1.30
753773--753799	2	13.5	2	100	0	54	51	0	0	48	1.00
764023--764047	3	8.3	3	100	0	50	32	0	0	68	0.90
765867--765900	16	2.1	16	94	0	59	52	5	0	41	1.25
766108--766144	2	18.5	2	88	0	56	48	2	0	48	1.15
766482--766558	33	2.4	33	78	12	88	58	0	2	38	1.12
766500--766562	32	2.0	32	87	6	92	55	0	0	44	0.99
766514--766582	12	5.3	13	72	11	61	59	0	0	40	0.97
766547--766582	19	1.9	18	88	5	54	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
766475--766584	8	14.0	8	70	17	70	60	0	1	38	1.08
769044--769076	3	11.0	3	100	0	66	33	0	0	66	0.92
769479--769563	14	5.7	15	72	20	63	58	0	0	41	0.98
769510--769560	19	2.5	21	87	6	70	54	0	0	45	0.99
769504--769559	12	5.4	11	72	24	50	53	0	0	46	1.00
770850--770897	21	2.3	21	85	0	60	25	12	33	29	1.92
770861--770905	21	2.1	21	88	8	65	28	17	28	24	1.97
782071--782125	21	2.5	20	75	13	56	30	14	10	43	1.80
783033--783075	21	2.1	21	83	12	54	30	2	0	67	1.03
784741--784771	2	15.5	2	93	0	53	48	0	0	51	1.00
789847--789879	16	2.1	16	100	0	66	81	0	18	0	0.68
792253--792294	12	3.4	12	81	15	50	64	0	4	30	1.14
798767--798810	3	14.7	3	100	0	88	65	0	0	34	0.93
799079--799157	37	2.1	37	90	0	122	44	17	10	27	1.81
805276--805319	2	22.0	2	100	0	88	50	0	0	50	1.00
807863--807892	2	15.5	2	93	6	53	50	0	0	50	1.00
812613--812651	2	19.5	2	89	0	60	46	2	0	51	1.14
812987--813075	27	3.1	27	76	18	74	51	1	1	46	1.15
825988--826017	2	15.0	2	100	0	60	50	0	0	50	1.00
830463--830494	2	16.0	2	100	0	64	50	50	0	0	1.00
834093--834138	24	1.9	24	95	0	83	43	17	2	36	1.61
849190--849245	24	2.3	25	75	6	62	55	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
849721--849747	3	9.0	3	100	0	54	66	0	0	33	0.92
850395--850426	2	16.0	2	100	0	64	50	0	0	50	1.00
852227--852262	2	18.0	2	100	0	72	50	0	0	50	1.00
852452--852503	24	2.2	24	83	13	63	34	0	3	61	1.14
852663--852689	2	13.5	2	100	0	54	51	0	0	48	1.00
853839--853875	17	2.1	18	95	5	67	24	0	5	70	1.08
854243--854289	18	2.7	18	80	3	51	36	0	2	61	1.08
854247--854308	31	2.0	32	83	3	81	40	0	1	58	1.08
854492--854543	26	2.1	25	85	7	70	46	0	3	50	1.20
861752--861786	2	17.5	2	100	0	70	48	0	0	51	1.00
876005--876034	2	15.0	2	100	0	60	50	0	0	50	1.00
877985--878011	2	13.5	2	100	0	54	51	0	0	48	1.00
878174--878198	2	12.5	2	100	0	50	52	0	48	0	1.00
880462--880488	1	27.0	1	100	0	54	0	100	0	0	0.00
882127--882209	30	2.8	29	80	7	87	44	2	1	51	1.22
882520--882560	8	5.0	8	82	5	55	80	2	0	17	0.82
882520--882559	17	2.4	17	87	4	55	80	2	0	17	0.83
882727--882751	11	2.3	11	100	0	50	56	0	0	44	0.99
882938--882974	18	2.1	18	90	5	58	64	0	0	35	0.94
883275--883307	11	2.9	12	91	8	52	39	0	0	60	0.97
883880--884059	89	2.0	89	97	0	342	45	15	16	23	1.85
885224--885259	2	18.0	2	94	0	63	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
885394--885432	2	19.5	2	100	0	78	48	0	0	51	1.00
886522--886606	30	2.7	32	76	9	93	43	9	34	12	1.75
886526--886589	30	2.1	30	91	0	101	46	12	31	9	1.73
889212--889282	23	3.1	23	80	11	58	28	1	1	69	1.06
889239--889287	9	5.1	9	81	18	55	24	0	0	75	0.80
889239--889287	14	3.4	14	78	16	55	24	0	0	75	0.80
889260--889347	45	2.0	44	82	10	108	30	0	5	63	1.17
901158--901459	85	3.6	84	75	12	305	31	7	20	40	1.81
901434--901503	32	2.2	32	84	0	86	35	10	24	30	1.88
924244--924272	2	14.5	2	100	0	58	0	48	0	51	1.00
924444--924487	2	22.0	2	100	0	88	50	0	0	50	1.00
926582--926620	20	2.0	20	100	0	78	48	10	20	20	1.78
932257--932475	34	6.5	33	80	5	240	25	6	26	42	1.78
932259--932473	68	3.2	68	84	3	274	25	6	25	42	1.79
932257--932473	102	2.1	101	87	1	308	25	6	25	42	1.79
936865--937083	34	6.5	34	86	2	289	25	7	25	41	1.82
936865--937083	102	2.2	101	89	1	330	25	7	25	41	1.82
938598--938649	21	2.5	21	87	6	70	34	3	26	34	1.75
943818--944281	61	7.5	60	84	5	577	25	26	18	30	1.98
944029--944596	298	1.9	284	83	9	707	25	27	18	28	1.98
944331--944555	56	4.0	55	79	9	247	28	27	20	24	1.99
944478--944649	95	1.8	95	91	2	283	27	27	19	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944428--944719	150	1.9	145	83	8	370	25	27	20	26	1.99
944576--945144	61	9.5	61	81	6	560	25	25	20	29	1.99
944578--945134	300	1.9	300	83	5	732	25	24	20	29	1.99
945142--945280	45	3.2	45	75	17	130	18	28	11	41	1.86
945308--945573	41	6.5	41	72	8	193	18	26	11	43	1.84
945270--945525	125	2.0	125	89	0	395	19	25	11	44	1.84
946221--946294	20	3.7	20	81	13	98	31	14	10	43	1.80
948674--948793	51	2.3	51	80	5	143	30	25	11	31	1.91
948774--948850	28	2.8	27	78	7	84	23	28	19	28	1.98
948834--948951	51	2.3	51	88	5	168	29	24	11	33	1.91
948643--948972	159	2.1	159	82	4	389	28	24	13	33	1.93
949066--949119	28	1.9	28	96	0	99	24	31	16	27	1.96
948806--949138	130	2.6	129	76	8	332	28	24	12	35	1.91
950584--950619	2	18.0	2	100	0	72	50	0	0	50	1.00
951137--951350	105	2.0	105	97	0	401	37	11	4	46	1.60
955420--955466	2	24.0	2	95	4	87	51	0	0	48	1.00
958902--958959	29	2.0	29	100	0	116	17	10	20	51	1.74
963150--963197	13	3.6	14	81	13	57	27	0	37	35	1.57
963810--964128	16	20.1	16	70	16	120	14	7	39	39	1.74
964178--964233	16	3.4	16	75	20	53	14	10	35	39	1.81
964245--964321	13	5.8	13	73	14	59	6	6	45	41	1.56
964209--964322	39	2.7	40	82	13	124	8	7	42	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964303--964470	37	4.6	36	75	12	144	2	4	52	39	1.38
964303--964453	44	3.4	43	81	9	171	2	3	54	39	1.31
964317--964422	8	14.1	8	78	12	93	3	0	58	37	1.16
964292--964423	51	2.6	50	84	7	158	3	2	54	39	1.31
964442--966897	65	37.6	66	77	18	1352	2	14	41	42	1.58
966448--967647	15	79.2	14	69	23	520	4	16	38	40	1.68
966988--967107	16	6.8	16	66	27	57	3	18	41	36	1.67
963263--967647	7	596.9	7	75	18	2711	4	13	41	40	1.64
967840--967866	14	1.9	14	100	0	54	0	14	48	37	1.45
967911--967986	7	10.6	7	78	19	77	6	14	38	40	1.72

Tables:   1   2   3   4   5   6   7