genome.fa.s181.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold181
Parameters: 2 7 7 80 10 50 1000
Length:  968729

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 727 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357486--357527	17	2.5	17	84	7	59	64	2	0	33	1.07
357764--357797	17	1.9	18	88	5	52	38	5	5	50	1.51
361814--361871	22	2.6	22	76	23	59	46	0	1	51	1.11
361845--361906	30	2.0	33	87	9	94	50	0	1	48	1.10
363430--363470	11	3.9	11	84	6	50	34	2	0	63	1.08
367838--367887	26	1.9	26	84	8	66	58	2	2	38	1.21
368175--368259	39	2.2	39	83	10	104	48	0	0	51	1.00
368846--368896	17	2.9	18	75	13	52	43	1	0	54	1.11
369179--369225	21	2.2	21	84	0	58	0	46	0	53	1.00
372698--372724	3	9.0	3	100	0	54	33	0	0	66	0.92
372804--373040	132	1.8	127	85	4	330	29	16	21	31	1.96
373155--373190	2	18.0	2	94	0	63	50	2	0	47	1.15
374086--374120	2	17.5	2	100	0	70	51	0	0	48	1.00
374120--374150	2	15.5	2	100	0	62	51	0	48	0	1.00
375116--375165	19	2.7	18	78	6	55	50	0	2	48	1.12
375127--375166	18	2.3	16	84	16	53	52	0	0	47	1.00
375841--375879	13	3.2	13	82	14	55	51	2	5	41	1.38
376092--376127	13	2.8	14	88	12	51	33	0	0	66	0.92
376293--376328	6	5.8	6	87	6	54	33	0	0	66	0.92
376293--376326	13	2.7	13	90	4	52	32	0	0	67	0.91
376289--376328	19	2.1	19	95	0	71	35	0	0	65	0.93
380465--380500	18	2.0	18	100	0	72	33	5	22	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381922--381951	2	15.0	2	100	0	60	50	0	0	50	1.00
387339--387380	16	2.5	17	81	14	52	61	9	16	11	1.55
387526--387574	24	2.0	24	88	7	73	51	0	10	38	1.36
390791--390844	27	2.0	27	89	7	83	55	1	0	42	1.10
390797--390865	27	2.4	28	84	15	81	56	2	0	40	1.14
390950--391002	22	2.4	23	81	15	67	45	0	1	52	1.11
391121--391148	10	2.8	10	100	0	56	60	0	0	39	0.97
397583--397687	48	2.3	47	82	12	130	53	0	0	45	1.06
397866--397915	2	25.0	2	93	0	82	52	2	0	46	1.12
399885--399932	23	2.1	23	96	0	87	41	4	22	31	1.73
400027--400070	22	2.0	22	100	0	88	22	13	22	40	1.89
404814--404865	27	1.9	27	85	14	72	42	0	1	55	1.10
408023--408048	2	13.0	2	100	0	52	50	0	50	0	1.00
408674--408881	76	2.7	77	91	3	339	36	17	18	27	1.93
413887--414017	51	2.7	48	80	13	144	42	1	1	54	1.19
413914--414020	51	2.1	52	87	7	155	41	0	1	56	1.17
413930--414032	51	2.0	51	83	3	127	40	3	2	52	1.35
414935--414986	23	2.3	23	83	9	63	53	1	0	44	1.11
421999--422044	19	2.5	19	82	13	60	41	0	0	58	0.98
422017--422071	24	2.3	24	75	15	60	43	0	1	54	1.10
422773--422841	22	3.4	20	68	14	52	37	0	2	59	1.12
422796--422856	26	2.3	25	78	13	61	44	0	1	54	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426007--426059	17	3.0	19	84	15	62	45	0	1	52	1.11
426890--426930	17	2.3	19	83	8	50	29	2	4	63	1.28
427152--427196	20	2.3	21	88	11	69	64	0	0	35	0.94
427159--427205	20	2.4	20	79	10	53	68	0	0	31	0.90
427515--427557	3	14.0	3	95	4	77	34	0	0	65	0.93
427512--427557	19	2.5	19	96	3	85	34	0	0	65	0.93
427778--427831	24	2.2	24	83	6	74	59	0	0	40	0.98
427805--427847	20	2.2	20	86	0	59	53	0	0	46	1.00
428121--428182	30	2.0	30	87	9	88	46	0	0	53	1.00
428131--428182	14	3.3	16	76	13	63	46	0	0	53	1.00
428140--428182	13	3.0	13	81	18	50	48	0	0	51	1.00
428156--428236	26	3.2	25	71	22	69	39	2	1	56	1.20
428206--428244	11	3.2	12	92	7	62	30	0	0	69	0.89
429470--429499	3	10.0	3	100	0	60	0	33	0	66	0.92
431900--431933	16	2.1	17	88	5	52	26	0	0	73	0.83
431957--432035	21	3.6	22	74	14	65	63	2	1	32	1.16
439752--439800	20	2.4	20	83	10	64	46	0	0	53	1.00
439796--439835	22	1.9	20	90	10	62	37	0	0	62	0.95
440763--440801	17	2.2	17	86	4	51	33	0	0	66	0.92
440743--440801	20	3.2	18	78	7	57	33	0	0	66	0.92
440764--440821	9	6.1	9	74	9	53	34	0	0	65	0.93
444260--444308	22	2.3	21	86	10	64	55	2	4	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444657--444682	2	13.0	2	100	0	52	50	0	0	50	1.00
444960--444990	15	2.1	15	93	0	53	70	0	0	29	0.87
445211--445265	28	2.0	28	86	6	78	60	3	0	36	1.15
445675--445706	2	16.0	2	100	0	64	50	0	0	50	1.00
446162--446197	17	2.1	18	89	5	56	55	0	0	44	0.99
446984--447030	14	3.4	14	79	5	51	40	0	0	59	0.97
446984--447041	11	4.8	12	73	24	50	39	0	1	58	1.08
446984--447041	19	3.0	19	82	12	73	39	0	1	58	1.08
448776--448939	50	3.3	50	87	6	226	38	17	13	30	1.88
449759--449796	18	2.1	19	95	5	69	65	0	0	34	0.93
449895--449933	14	2.8	13	82	14	51	61	0	0	38	0.96
449965--450039	28	2.7	29	72	14	68	65	1	1	32	1.09
452224--452255	3	10.7	3	100	0	64	31	0	0	68	0.90
452882--452941	30	2.0	30	100	0	120	16	10	26	46	1.78
455646--455691	15	3.1	15	77	0	56	56	0	0	43	0.99
455716--455777	32	1.9	32	86	0	88	48	0	0	51	1.00
455732--455780	16	3.0	17	76	8	57	57	0	0	42	0.99
457817--457898	19	4.5	20	71	21	65	31	0	0	68	0.90
457817--457869	24	2.2	25	86	10	74	28	0	0	71	0.86
457794--457871	17	4.3	17	75	16	68	30	1	0	67	0.98
457820--457897	31	2.5	30	81	8	77	32	0	0	67	0.90
458497--458537	21	2.0	21	85	0	55	29	2	2	65	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458790--458829	8	5.2	8	77	22	50	35	0	0	65	0.93
458790--458845	20	2.8	20	81	13	62	33	0	0	66	0.92
461203--461227	13	1.9	13	100	0	50	24	12	32	32	1.91
461721--461766	21	2.2	21	84	7	58	30	17	10	41	1.84
461863--461925	22	3.0	21	77	13	58	57	0	0	42	0.99
461886--461935	17	2.9	18	76	8	59	64	0	0	36	0.94
461881--461940	12	4.7	12	74	22	50	63	0	0	36	0.95
461870--461943	34	2.2	34	81	15	91	59	0	0	40	0.97
464874--464972	48	2.1	48	96	0	180	21	26	11	41	1.86
466904--466929	13	2.0	13	100	0	52	23	0	7	69	1.14
467216--467256	20	2.2	19	87	12	59	29	9	12	48	1.72
470278--470321	3	14.7	3	95	0	79	34	0	2	63	1.07
472186--472251	27	2.6	24	77	18	62	51	7	0	40	1.30
473733--473766	17	2.0	17	94	0	59	29	5	14	50	1.67
476373--476454	2	42.0	2	73	9	53	50	6	2	41	1.40
476579--476616	13	2.9	13	88	7	51	50	5	0	44	1.24
476636--476684	19	2.7	19	87	6	66	71	0	2	26	0.97
476636--476683	18	2.7	19	81	9	57	72	0	2	25	0.95
476865--476904	11	3.6	11	82	0	53	62	0	0	37	0.95
478146--478176	2	15.5	2	100	0	62	0	0	48	51	1.00
479476--479513	2	19.0	2	94	0	67	50	2	0	47	1.15
479396--479524	65	2.0	64	86	6	179	32	7	11	48	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480243--480284	20	2.1	20	90	0	66	28	9	21	40	1.84
481233--481261	15	1.9	15	100	0	58	34	31	34	0	1.58
481768--481803	2	18.0	2	100	0	72	50	0	0	50	1.00
484506--484543	14	2.6	14	84	15	51	73	0	2	23	0.95
485655--485719	33	2.0	33	82	11	80	21	12	0	66	1.24
488465--488489	1	25.0	1	100	0	50	0	0	0	100	0.00
498770--498824	2	27.5	2	96	0	101	49	1	0	49	1.11
500185--500227	19	2.3	18	80	11	50	55	0	0	44	0.99
500188--500226	20	2.0	19	85	5	51	58	0	0	41	0.98
502177--502227	2	26.5	2	88	7	79	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7