genome.fa.s186.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold186
Parameters: 2 7 7 80 10 50 1000
Length:  1043505

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 709 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333719--334277	165	3.4	164	84	3	622	48	9	10	32	1.69
333825--334277	165	2.7	166	87	2	626	49	9	9	32	1.67
340650--340787	51	2.7	52	82	2	172	40	13	15	29	1.86
341516--341700	52	3.6	52	83	2	237	36	17	22	23	1.95
342249--342312	28	2.2	30	91	5	105	28	12	35	23	1.91
343083--343108	13	2.0	13	100	0	52	38	15	15	30	1.88
344521--344582	28	2.2	28	91	5	99	27	16	16	40	1.89
345191--345217	7	3.9	7	100	0	54	40	14	0	44	1.46
352255--352292	15	2.7	15	84	12	53	21	0	0	78	0.74
352753--352787	12	2.9	12	91	8	54	82	0	14	2	0.77
354389--354901	156	3.3	154	74	7	446	24	14	20	40	1.90
359082--359521	153	2.9	153	78	10	432	49	10	8	32	1.65
366626--366705	41	2.0	41	87	0	115	28	20	15	36	1.92
367296--367372	29	2.7	30	82	8	88	22	15	19	42	1.88
367441--367597	59	2.6	60	79	6	158	23	19	12	45	1.83
367439--367849	30	14.0	28	72	10	171	22	17	11	48	1.80
367627--367796	86	2.0	87	83	5	220	21	16	11	50	1.76
367745--367835	29	3.1	29	80	1	92	26	17	9	46	1.79
368990--369063	28	2.6	28	87	8	98	21	17	35	25	1.95
369046--369538	52	9.4	51	73	9	305	32	13	25	28	1.93
369133--369584	52	8.6	52	74	11	237	33	13	25	28	1.94
369252--369326	27	2.7	28	89	2	107	21	20	34	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368938--369533	264	2.3	263	91	2	944	31	13	26	27	1.94
369069--369752	316	2.2	315	92	1	1165	33	13	25	28	1.93
369568--369642	27	2.7	28	89	2	107	21	20	34	24	1.96
369626--369747	51	2.4	51	87	5	165	32	11	23	31	1.90
369312--369747	52	8.3	52	72	12	189	32	13	25	29	1.93
372098--372123	13	2.0	13	100	0	52	38	15	15	30	1.88
372175--372303	19	7.8	18	71	28	108	35	17	12	34	1.88
372194--372281	13	5.8	13	71	27	59	31	19	13	35	1.91
372169--372301	32	4.2	32	96	0	221	35	18	12	34	1.87
372339--372415	21	3.7	19	82	16	82	36	16	12	33	1.88
374746--374796	10	4.5	12	85	11	56	72	0	1	25	0.95
378299--379028	84	8.7	86	78	6	554	17	30	16	35	1.93
378367--379823	126	11.5	127	73	9	843	17	29	17	34	1.94
378263--379549	42	30.5	42	70	12	449	17	30	17	34	1.93
378829--379248	220	1.9	220	87	0	608	19	31	16	32	1.94
378913--379162	136	1.8	136	88	5	389	19	32	16	31	1.94
379049--379823	84	9.2	84	78	6	658	18	29	18	34	1.94
378259--379823	252	6.2	250	74	7	968	17	29	17	34	1.93
379048--379824	42	18.5	41	69	9	296	18	29	18	34	1.94
379601--379823	80	2.7	82	77	8	218	18	27	16	36	1.93
380375--380426	3	19.0	3	79	15	51	73	1	0	25	0.94
380378--380422	8	6.0	8	80	12	51	75	2	0	22	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380375--380411	18	2.0	19	94	5	67	75	0	0	24	0.80
380375--380425	11	4.8	10	86	11	59	74	1	0	23	0.92
380376--380426	14	3.6	14	84	7	59	72	1	0	25	0.95
380913--380938	13	2.0	13	100	0	52	38	15	15	30	1.88
383154--383198	21	2.1	21	84	8	56	53	4	20	22	1.63
385002--385032	15	2.1	15	93	0	53	48	16	22	12	1.80
387113--387138	13	2.0	13	100	0	52	30	15	15	38	1.88
387259--387305	21	2.3	21	79	20	55	34	19	4	42	1.70
387261--387303	20	2.2	19	84	16	52	32	18	4	44	1.71
389680--389705	13	2.0	13	100	0	52	38	15	15	30	1.88
391263--391306	22	2.0	22	86	4	61	79	6	9	4	1.04
391391--391429	21	1.9	21	94	5	71	56	25	12	5	1.57
393969--393995	2	13.5	2	100	0	54	51	0	0	48	1.00
396901--396935	2	17.5	2	100	0	70	48	0	0	51	1.00
401786--401817	3	10.7	3	100	0	64	31	0	0	68	0.90
404696--404720	2	12.5	2	100	0	50	52	0	0	48	1.00
404720--404760	2	20.5	2	94	0	73	51	46	2	0	1.14
410412--410583	79	2.2	79	87	1	263	8	23	4	63	1.40
411234--411311	3	27.0	3	76	21	62	29	0	1	69	0.97
411228--411311	28	2.9	28	84	7	105	30	0	1	67	0.98
411260--411343	7	12.0	7	73	14	57	23	1	0	75	0.88
411260--411340	10	8.1	10	75	11	60	24	1	0	74	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411241--411316	38	2.0	38	84	5	100	26	1	1	71	1.02
411219--411311	25	3.5	25	73	18	80	30	0	1	68	0.96
411830--411873	5	8.4	5	85	5	52	36	0	0	63	0.95
411832--411868	6	6.7	6	90	9	53	32	0	0	67	0.91
412387--412421	18	2.0	17	88	5	52	45	0	0	54	0.99
412525--412884	155	2.3	156	84	3	440	41	16	13	28	1.87
414525--414613	19	4.9	19	78	18	100	37	16	15	30	1.91
414547--414643	32	3.0	32	92	1	149	42	16	15	25	1.87
414566--414594	13	2.2	13	100	0	58	37	13	17	31	1.89
415344--415408	29	2.2	29	83	5	78	50	10	7	30	1.65
416140--416172	10	3.3	10	91	0	57	0	12	0	87	0.53
416714--417027	155	2.0	154	81	6	368	48	8	9	32	1.67
418132--418306	43	4.0	42	74	12	147	39	18	23	18	1.92
418310--418691	40	9.5	40	74	5	243	41	16	24	17	1.89
418310--418678	81	4.6	81	75	5	316	41	16	24	17	1.89
418330--418658	121	2.7	121	78	2	338	43	15	23	17	1.87
419229--419486	90	2.9	88	79	7	243	42	14	19	23	1.88
419229--419398	90	1.9	89	86	7	245	42	15	19	22	1.88
419366--419497	44	3.0	45	69	20	123	42	14	18	25	1.87
419215--419721	88	5.7	87	74	8	369	42	15	19	23	1.89
423250--423310	19	3.2	19	86	4	86	45	13	9	31	1.75
423254--423308	20	2.8	20	88	2	76	49	12	10	27	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423347--423399	20	2.6	20	84	3	61	33	15	11	39	1.83
424962--425031	27	2.6	27	82	6	97	25	17	31	25	1.97
427908--428347	61	7.6	61	77	14	233	33	14	27	24	1.94
428031--428232	52	3.9	52	82	1	235	32	17	25	24	1.97
428175--428354	61	2.9	62	93	0	299	35	12	27	24	1.92
428304--428391	43	2.0	43	91	0	140	29	19	26	25	1.98
428306--428373	21	3.2	20	66	25	50	29	16	27	26	1.97
428459--428655	32	6.2	32	74	7	168	23	22	28	25	1.99
428459--428625	63	2.6	65	78	7	182	23	23	28	25	2.00
428483--428660	95	1.9	96	83	3	234	24	21	28	24	1.99
428459--428655	64	3.1	63	77	4	216	23	22	28	25	1.99
428855--428926	28	2.6	28	80	2	74	26	19	27	26	1.99
430259--430298	9	4.3	9	87	6	62	2	0	12	85	0.71
430259--430298	19	2.2	19	90	4	64	2	0	12	85	0.71
442932--442977	5	9.4	5	84	11	60	0	15	0	84	0.62
444261--444286	13	2.0	13	100	0	52	30	15	15	38	1.88
444346--444398	20	2.6	21	88	8	74	26	16	16	39	1.91
444386--444411	13	2.0	13	100	0	52	38	15	15	30	1.88
447067--447092	8	3.2	8	100	0	52	61	23	0	15	1.33
453107--453159	20	2.6	21	82	8	65	28	16	16	37	1.91
453645--453693	17	2.9	17	80	17	57	4	20	0	75	0.96
453641--453692	16	3.1	17	77	20	56	5	21	0	73	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453881--453946	33	2.0	33	94	5	116	33	9	15	42	1.78
454032--454080	22	2.2	22	85	3	62	4	8	2	85	0.79
454044--454098	18	3.1	17	79	7	65	5	7	3	83	0.89
454035--454101	25	2.6	25	76	6	64	7	7	2	82	0.94
454031--454104	37	2.0	38	87	10	109	6	8	2	82	0.93
454033--454116	36	2.3	37	82	12	102	8	7	3	80	0.99
454441--454479	6	6.3	6	83	16	53	2	15	0	82	0.79
455246--455270	12	2.1	12	100	0	50	36	8	16	40	1.77
455684--455840	77	2.0	77	96	0	287	51	12	13	22	1.74
456691--456725	18	1.9	18	88	11	54	68	5	0	25	1.11

Tables:   1   2   3   4   5   6