genome.fa.s186.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold186
Parameters: 2 7 7 80 10 50 1000
Length:  1043505

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 709 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
599295--599333	7	5.6	7	85	8	53	0	12	0	87	0.55
599308--599362	14	4.0	13	81	9	56	0	3	12	83	0.77
599295--599332	15	2.6	15	91	4	60	0	13	0	86	0.56
599307--599361	21	2.7	20	80	5	56	0	3	10	85	0.72
609622--609652	4	7.8	4	100	0	62	77	0	0	22	0.77
611676--612177	79	6.4	79	85	4	586	34	14	23	27	1.94
612113--612229	51	2.3	50	88	5	182	31	11	25	31	1.91
612035--612304	129	2.1	128	86	4	373	33	12	24	29	1.92
612164--612315	78	1.9	78	91	0	250	32	11	25	30	1.91
614509--614694	50	3.7	50	84	3	232	38	12	20	28	1.89
619472--619502	15	2.1	15	93	0	53	48	16	22	12	1.80
621580--621605	13	2.0	13	100	0	52	30	15	15	38	1.88
621726--621771	21	2.2	20	81	11	58	32	19	4	43	1.71
624158--624183	13	2.0	13	100	0	52	38	15	15	30	1.88
626050--626085	19	1.9	19	88	5	56	66	2	19	11	1.35
628737--628775	10	4.1	9	87	9	51	33	2	10	53	1.48
628737--628775	19	2.0	20	90	5	62	33	2	10	53	1.48
628987--629026	21	2.0	20	90	5	62	35	0	20	45	1.51
629936--630496	167	3.4	165	78	7	451	28	10	10	49	1.71
630894--630932	10	3.9	10	86	0	60	76	0	15	7	0.99
631122--631159	20	2.0	20	84	5	51	21	15	10	52	1.72
632154--632179	12	2.2	12	100	0	52	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632545--632926	154	2.5	156	86	1	493	23	19	19	37	1.94
635269--635429	81	2.0	81	80	7	184	30	8	19	41	1.81
636295--636383	26	3.5	26	82	13	114	25	11	11	51	1.71
636312--636359	23	2.1	23	92	0	78	27	10	10	52	1.68
640506--640530	13	1.9	13	100	0	50	36	16	16	32	1.90
640486--640552	33	2.0	33	88	0	98	32	11	14	40	1.83
640593--640617	13	1.9	13	100	0	50	32	16	16	36	1.90
644411--644472	20	3.0	21	81	4	74	40	9	14	35	1.79
645032--645179	54	2.6	57	81	6	185	23	21	13	41	1.89
645189--645371	58	3.3	57	72	12	171	25	20	14	39	1.90
645251--645426	52	3.3	52	69	17	160	23	19	15	41	1.90
645193--645602	110	3.7	110	83	2	477	25	20	15	39	1.91
645574--645775	52	3.9	52	83	2	253	23	22	16	37	1.94
645579--645797	104	2.1	104	80	1	251	24	22	16	35	1.95
646426--646464	20	2.0	20	89	0	60	43	10	15	30	1.80
646450--646499	21	2.4	21	93	0	82	36	12	14	38	1.83
650963--651012	21	2.4	21	86	3	66	46	0	14	40	1.44
658816--658880	15	4.6	14	75	7	60	63	4	20	12	1.46
662464--662507	20	2.2	20	88	8	63	43	18	13	25	1.86
663151--663186	18	2.0	18	88	0	54	5	44	0	50	1.25
664593--664642	20	2.5	20	90	0	82	8	26	44	22	1.80
680691--680822	66	2.0	66	100	0	264	18	7	15	59	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
680956--680994	19	2.0	19	85	5	51	46	5	12	35	1.65
681564--681620	19	2.9	19	81	2	69	35	14	14	36	1.86
681676--681715	20	2.0	20	85	0	53	42	12	12	32	1.80
685302--685344	21	2.0	21	86	4	59	18	6	16	58	1.60
687223--687256	18	1.9	18	88	5	52	11	17	11	58	1.62
688056--688120	33	2.0	32	85	11	87	35	15	18	30	1.92
689033--689062	12	2.4	12	94	5	51	26	30	0	43	1.55
689001--689114	57	2.0	57	100	0	228	24	29	5	40	1.77
689090--689115	12	2.2	12	100	0	52	23	30	0	46	1.53
690682--690714	13	2.5	13	95	0	57	33	18	15	33	1.92
696159--696674	255	2.0	255	99	0	1023	32	13	19	33	1.91
697286--697352	37	1.9	35	88	11	102	29	25	11	32	1.92
697810--697835	13	2.0	13	100	0	52	30	15	15	38	1.88
697790--697853	32	2.0	33	87	3	94	28	14	17	40	1.88
699608--699632	13	1.9	13	100	0	50	32	16	16	36	1.90
702745--702811	37	1.9	35	88	11	102	29	25	11	32	1.92
703249--703300	19	2.7	20	84	6	70	28	13	17	40	1.87
703249--703306	19	3.0	18	80	12	62	25	12	20	41	1.87
708090--708990	49	19.6	49	70	15	561	29	18	26	24	1.98
708134--708468	150	2.2	149	81	4	372	31	18	25	24	1.97
708179--708413	101	2.4	98	83	3	283	32	18	24	24	1.97
708432--708946	39	12.0	39	69	18	292	27	19	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708383--708995	88	7.0	87	91	0	929	28	19	27	25	1.99
709118--709171	27	2.0	27	88	0	81	29	16	31	22	1.96
709081--709587	60	8.1	60	77	10	408	35	13	30	19	1.91
709140--709616	34	14.8	34	69	16	232	35	13	31	19	1.91
709242--709426	27	6.2	27	70	21	111	34	14	31	20	1.92
709074--709676	128	4.7	127	78	8	591	35	13	30	20	1.91
709498--709551	27	2.0	27	92	0	90	33	14	29	22	1.94
709591--709869	30	9.1	30	77	8	231	33	14	28	23	1.94
709588--709865	61	4.5	61	85	2	308	33	14	28	23	1.94
709591--709866	91	3.0	90	81	6	259	32	14	28	23	1.94
719341--719478	51	2.7	51	87	0	177	30	15	12	42	1.83
720274--720574	32	9.5	32	80	5	272	30	27	17	24	1.97
720328--720603	32	8.7	31	78	7	216	31	28	16	22	1.96
720688--720860	54	3.2	54	79	4	190	25	22	12	39	1.89
720725--720873	52	2.8	53	78	7	169	26	22	14	37	1.92
720624--720967	110	3.2	106	77	9	302	25	21	13	39	1.90
721240--721311	19	3.7	19	84	1	90	29	13	19	37	1.90
721361--721385	13	1.9	13	100	0	50	36	16	16	32	1.90
721341--721405	33	2.0	33	90	0	103	35	15	16	32	1.91
721340--721406	20	3.7	19	70	25	56	34	14	16	34	1.90
723123--723152	13	2.3	13	100	0	60	30	16	13	40	1.87
725602--725698	51	1.9	51	84	0	131	32	24	7	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725730--725913	79	2.3	79	81	3	210	27	23	15	33	1.95
725795--725959	79	2.1	79	80	4	181	26	24	15	33	1.95
729597--729724	52	2.5	52	94	3	224	30	17	17	33	1.94
729733--729757	13	1.9	13	100	0	50	36	16	16	32	1.90
729820--729844	13	1.9	13	100	0	50	32	16	16	36	1.90
730250--730896	49	12.6	55	77	12	345	34	16	24	24	1.95
730085--730571	171	2.8	171	89	3	687	37	15	24	23	1.93
730486--730902	49	8.6	49	84	7	534	32	17	24	24	1.97
730485--730853	92	3.9	92	90	4	540	32	18	24	24	1.97
730529--730902	141	2.6	142	89	7	546	31	18	25	24	1.97
730486--730902	92	4.3	96	89	3	426	32	17	24	24	1.97
730907--731001	34	2.8	33	96	3	181	15	18	36	28	1.92
731006--731549	34	16.9	33	79	13	527	31	13	34	20	1.91
731006--731551	128	4.2	131	81	11	598	31	13	34	20	1.91
730990--731544	69	8.6	67	83	12	543	31	12	34	20	1.91
731510--731641	31	4.3	30	79	5	129	29	18	28	23	1.97
731510--731651	62	2.3	63	86	7	191	30	16	29	22	1.96
731529--731653	31	4.0	31	82	12	150	26	18	30	24	1.98
737687--737742	27	2.1	27	86	0	76	26	17	35	19	1.94
739855--739982	52	2.5	52	94	3	224	30	17	17	33	1.94
739991--740015	13	1.9	13	100	0	50	36	16	16	32	1.90
740078--740102	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747006--747030	13	1.9	13	100	0	50	36	16	16	32	1.90
747083--747134	19	2.7	19	93	0	95	40	17	11	30	1.85
747873--748349	49	9.8	49	80	5	493	32	16	25	25	1.97
748356--748539	33	5.7	32	86	3	219	17	18	31	32	1.95
750025--750075	9	5.9	9	82	15	63	0	0	17	82	0.67
750001--750078	12	6.4	12	74	21	65	0	1	15	83	0.72
750010--750080	30	2.4	29	90	6	108	0	1	14	84	0.69
750014--750082	29	2.4	29	88	7	97	0	1	14	84	0.70
763976--764000	13	1.9	13	100	0	50	36	16	16	32	1.90
772708--772792	1	85.0	1	71	0	62	85	11	0	2	0.68

Tables:   1   2   3   4   5   6