genome.fa.s190.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold190
Parameters: 2 7 7 80 10 50 1000
Length:  1396844

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 509 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1345612--1345642	13	2.4	13	94	0	53	41	9	16	32	1.80
1345685--1345742	19	3.1	18	85	11	80	34	17	13	34	1.89
1345726--1345752	13	2.1	13	100	0	54	40	14	14	29	1.86
1345707--1345768	32	1.9	33	90	3	99	38	14	16	30	1.88
1349603--1349666	30	2.1	30	97	0	119	45	18	14	21	1.85
1350268--1360640	475	21.9	474	82	4	10529	36	13	18	31	1.89
1361683--1361798	51	2.3	51	90	0	178	28	13	29	28	1.95
1361609--1362116	130	3.9	130	80	7	509	33	11	26	28	1.92
1361803--1361926	48	2.5	51	77	15	136	32	9	29	29	1.89
1361937--1362053	51	2.3	51	83	2	146	34	12	25	27	1.92
1361643--1362116	257	1.8	256	83	3	630	33	11	26	28	1.92
1364476--1364548	29	2.5	30	93	6	123	36	16	20	26	1.93
1365324--1365613	61	4.9	61	80	8	296	28	19	24	27	1.99
1365510--1365635	55	2.3	55	86	4	155	25	20	23	30	1.99
1365504--1365908	204	2.0	204	89	1	616	25	20	27	26	1.99
1365653--1365838	55	3.4	55	82	4	232	22	23	25	27	2.00
1366927--1366985	1	59.0	1	79	0	64	3	1	5	89	0.62
1366927--1366983	15	3.9	15	86	9	82	3	1	5	89	0.64
1366927--1366985	28	2.1	27	90	3	91	3	1	5	89	0.62
1379376--1379493	51	2.3	51	85	4	157	29	15	27	27	1.96
1379478--1379552	28	2.7	28	83	8	100	24	18	34	22	1.96
1379536--1379651	51	2.3	51	93	0	196	30	11	26	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1379347--1379683	158	2.1	159	84	4	432	29	14	28	27	1.95
1379504--1379841	130	2.6	129	83	3	428	31	11	26	29	1.91
1382235--1382285	20	2.5	20	90	0	75	45	17	11	25	1.83
1382588--1384761	475	4.6	474	83	4	2530	37	13	17	31	1.89
1385119--1385175	19	2.9	19	86	2	78	31	15	17	35	1.92
1385224--1385250	13	2.1	13	100	0	54	29	14	14	40	1.86
1394661--1394735	20	3.8	20	87	0	114	30	14	14	40	1.86

Tables:   1   2   3   4   5

The End!