genome.fa.s190.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold190
Parameters: 2 7 7 80 10 50 1000
Length:  1396844

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 509 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1123642--1123676	18	1.9	18	88	0	52	37	8	28	25	1.85
1124699--1125856	158	7.3	158	66	12	394	35	15	17	31	1.91
1122546--1126104	476	7.5	475	85	5	4341	36	14	18	31	1.90
1125909--1126293	197	2.0	197	86	3	542	36	12	20	30	1.89
1125427--1126765	669	2.0	672	83	3	1716	36	13	19	30	1.90
1126108--1129123	159	19.1	157	65	12	706	37	13	19	30	1.90
1126108--1129483	467	7.1	475	88	2	4296	37	13	19	29	1.90
1129601--1130198	300	2.0	300	80	4	679	36	12	18	33	1.88
1129920--1130884	474	2.0	473	84	3	1253	35	13	19	31	1.91
1132045--1132075	15	2.1	15	93	0	53	48	16	22	12	1.80
1134144--1134182	13	3.0	13	96	0	69	30	17	15	35	1.91
1136705--1136730	13	2.0	13	100	0	52	38	15	15	30	1.88
1137496--1139106	159	10.2	159	66	13	464	35	13	19	31	1.91
1137482--1147106	474	20.4	473	82	3	11235	36	13	19	30	1.91
1148731--1148806	12	6.9	11	75	15	52	39	2	48	9	1.49
1148730--1148815	24	3.8	24	72	17	85	41	2	45	10	1.51
1148721--1148839	42	2.8	42	92	0	193	42	2	46	8	1.47
1153794--1175126	472	45.1	472	84	3	24524	36	13	19	31	1.90
1155635--1158686	159	19.4	154	65	15	459	36	13	19	31	1.90
1161682--1161729	25	1.9	25	100	0	96	39	12	25	22	1.89
1159186--1175093	159	100.9	155	64	13	3059	36	13	19	30	1.90
1172051--1173657	160	10.3	159	65	14	430	36	13	18	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1176121--1176207	42	2.1	42	95	0	156	32	16	14	36	1.89
1176121--1176187	22	3.1	22	75	16	86	31	19	13	35	1.90
1176134--1176209	20	3.7	20	76	13	82	32	13	17	36	1.88
1178271--1178314	21	2.1	21	86	0	61	61	0	20	18	1.35
1179596--1179639	21	2.1	21	86	0	61	61	0	20	18	1.35
1180921--1180964	21	2.1	21	86	0	61	61	0	20	18	1.35
1183468--1183543	12	6.9	11	74	16	52	38	2	50	9	1.49
1183467--1183552	24	3.8	24	70	17	76	40	2	46	10	1.51
1183458--1183576	42	2.8	42	89	0	184	42	2	47	8	1.47
1191047--1191086	15	2.7	15	80	0	53	82	2	12	2	0.87
1191833--1191908	12	6.9	11	75	15	52	39	2	48	9	1.49
1191832--1191917	24	3.8	24	72	17	85	41	2	45	10	1.51
1191823--1191941	42	2.8	42	90	0	184	43	2	45	8	1.47
1197866--1197896	10	3.1	10	90	0	53	22	29	6	41	1.78
1198968--1200617	159	10.4	154	66	13	573	36	13	19	30	1.91
1198647--1201187	949	2.7	946	84	4	3244	36	13	19	30	1.91
1203493--1203557	33	2.0	33	84	0	85	47	0	36	15	1.46
1203980--1206095	158	13.4	158	66	12	736	37	13	19	29	1.91
1203832--1206149	475	4.9	472	87	2	3112	36	13	19	30	1.90
1205438--1206853	706	2.0	712	82	5	1725	37	13	18	29	1.90
1206398--1210532	475	8.8	476	86	4	5572	37	14	18	30	1.90
1206398--1210528	159	26.4	156	67	12	1406	37	14	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1210855--1210905	20	2.6	20	87	3	68	31	19	15	33	1.93
1212576--1212606	3	10.3	3	92	0	53	35	0	35	29	1.58
1218547--1218611	33	2.0	33	84	0	85	24	29	18	27	1.98
1218942--1219223	143	2.0	143	98	0	546	32	9	17	40	1.82
1218984--1219270	143	2.0	141	81	5	326	35	11	16	36	1.85
1220537--1224792	159	27.0	159	68	10	1498	37	13	17	31	1.89
1221426--1223374	158	12.3	158	70	9	570	36	14	17	31	1.90
1225045--1239104	159	88.9	157	66	13	3936	36	13	18	30	1.90
1224802--1239319	477	30.6	477	86	2	19560	37	13	18	30	1.90
1226660--1238219	158	73.1	160	66	13	1519	37	13	18	30	1.90
1240431--1240475	23	2.0	23	82	4	56	33	11	6	48	1.65
1240827--1240893	33	2.0	33	85	0	89	29	14	28	26	1.96
1248455--1248483	13	2.2	13	100	0	58	37	13	17	31	1.89
1248434--1248501	33	2.1	33	82	0	82	38	19	14	27	1.91
1248530--1248602	20	3.7	19	83	7	76	39	17	15	27	1.90
1248893--1249220	159	2.1	159	83	3	419	36	15	16	31	1.90
1248923--1249261	159	2.1	158	81	6	382	37	15	16	30	1.90
1249279--1250530	474	2.6	470	84	3	1535	35	13	18	31	1.90
1255514--1255632	42	2.8	42	92	0	193	8	46	2	42	1.47
1255547--1255622	12	6.9	11	75	15	52	9	48	2	39	1.49
1255538--1255623	24	3.8	24	72	17	85	10	45	2	41	1.51
1255529--1255599	18	3.6	18	69	20	52	9	43	2	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1257252--1258208	475	2.0	462	84	6	1228	38	13	19	28	1.90
1258228--1264609	475	13.4	476	85	2	8067	30	19	14	36	1.91
1258946--1264238	158	33.4	158	65	14	1037	30	19	14	36	1.91
1265303--1268058	477	5.7	475	78	9	2777	30	19	13	36	1.90
1266726--1267016	159	1.8	158	85	3	406	33	18	13	34	1.90
1268941--1269606	159	4.2	159	67	8	422	29	18	14	37	1.90
1268758--1269972	476	2.6	476	85	1	1553	30	18	13	37	1.89
1270298--1274412	159	26.0	159	65	13	630	30	19	14	36	1.91
1270471--1274412	476	8.3	476	84	3	4986	30	19	13	36	1.91
1275441--1275517	24	3.5	23	71	20	74	41	0	45	12	1.43
1275432--1275550	42	2.8	42	88	0	166	44	0	43	10	1.45
1275441--1275517	12	6.9	12	66	26	53	41	0	45	12	1.43
1275462--1275522	9	6.1	9	72	20	50	45	0	40	13	1.43
1281947--1282310	159	2.3	159	83	5	434	29	17	16	37	1.91
1282103--1284825	476	5.7	476	84	3	3417	29	19	14	37	1.91
1282186--1284825	952	2.8	950	91	1	4103	29	19	14	36	1.91
1284439--1285209	388	2.0	387	91	0	1256	29	17	16	36	1.92
1283964--1285686	863	2.0	861	84	3	2261	29	18	15	37	1.91
1284824--1286950	477	4.5	475	84	5	2571	29	19	14	37	1.91
1284824--1286950	952	2.2	948	84	4	2734	29	19	14	37	1.91
1288561--1288678	41	2.8	42	90	1	184	43	2	45	8	1.48
1288570--1288678	42	2.6	41	92	1	182	41	2	46	9	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1300635--1300681	21	2.3	20	88	3	67	85	4	10	0	0.74
1304391--1309647	475	11.1	476	84	3	6400	29	18	14	37	1.90
1305177--1306334	158	7.3	157	67	12	384	29	17	15	37	1.91
1309407--1309445	21	2.0	19	85	14	53	28	15	10	46	1.78
1309650--1314838	475	10.9	475	84	3	6360	30	19	13	37	1.90
1314177--1315453	631	2.0	634	84	3	1662	30	19	13	36	1.90
1309893--1315944	159	38.3	157	64	13	745	30	19	13	36	1.90
1314791--1318282	476	7.4	474	83	5	4139	30	18	13	37	1.90
1316052--1323182	159	45.0	158	66	12	1998	30	18	13	37	1.90
1316002--1318282	951	2.4	948	86	2	3094	30	18	13	37	1.90
1318251--1323294	476	10.6	476	85	3	6033	30	18	13	36	1.90
1324936--1324996	9	6.1	9	78	14	50	45	0	40	13	1.43
1324919--1325024	42	2.5	41	84	6	149	42	0	43	14	1.45
1324958--1325009	24	2.1	25	85	3	70	46	0	42	11	1.40
1324982--1325030	18	2.7	18	81	6	55	42	0	46	10	1.37
1324921--1325017	21	4.6	21	66	24	53	43	0	42	14	1.45
1331165--1333801	159	16.6	157	67	13	840	30	18	14	36	1.90
1330160--1334117	476	8.3	478	85	3	4859	30	18	14	36	1.90
1333248--1334954	867	2.0	865	85	3	2313	30	18	13	37	1.90
1334115--1338874	475	10.1	474	82	4	5590	30	18	14	36	1.90
1334115--1338897	946	5.1	943	86	4	5818	30	18	14	36	1.90
1335650--1338680	158	19.2	159	65	11	556	31	18	13	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1339657--1339845	61	3.1	62	83	3	215	25	29	17	26	1.98
1339847--1340092	62	4.0	60	84	7	273	27	28	17	26	1.98
1339879--1340092	61	3.5	60	86	6	279	26	27	19	26	1.99
1339596--1340066	224	2.1	216	83	6	592	26	28	16	27	1.97
1339885--1340127	61	4.0	61	83	4	186	25	29	18	25	1.98
1339656--1340377	285	2.5	284	91	1	1142	25	28	18	27	1.98
1340136--1340400	61	4.3	61	86	2	325	25	26	21	26	2.00
1340170--1340400	123	1.9	122	87	2	338	25	27	22	24	1.99
1341034--1341165	49	2.7	49	89	1	183	28	18	14	37	1.90
1343431--1343615	79	2.3	81	85	4	239	27	28	14	29	1.95

Tables:   1   2   3   4   5