genome.fa.s197.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold197
Parameters: 2 7 7 80 10 50 1000
Length:  573162

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 502 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360313--360396	27	3.2	27	74	15	70	75	3	2	19	1.07
360310--360444	8	15.0	9	69	20	86	71	2	2	22	1.13
360328--360448	10	13.0	10	73	13	64	71	2	3	22	1.12
360653--360923	135	2.0	133	84	4	348	38	7	5	49	1.54
361922--361964	11	3.8	11	80	17	52	51	0	0	48	1.00
361954--361995	17	2.4	17	80	11	50	52	2	0	45	1.13
362168--362204	14	2.5	15	91	8	58	32	0	0	67	0.91
362171--362209	13	2.8	14	84	7	53	30	0	0	69	0.89
368185--368344	38	4.2	38	79	3	153	38	18	17	25	1.92
368185--368366	38	4.8	38	75	6	138	37	18	17	27	1.92
368185--368352	76	2.2	76	83	6	207	38	17	16	27	1.92
368880--368920	21	1.9	22	85	14	59	60	9	0	29	1.28
369170--369221	20	2.6	20	78	0	59	59	0	1	38	1.08
369220--369260	21	2.0	21	85	9	57	39	4	0	56	1.21
375586--375724	38	3.7	38	82	3	122	34	18	17	29	1.94
430964--430993	16	1.9	16	93	6	53	13	16	13	56	1.67
433216--433260	12	3.6	12	85	8	54	84	8	6	0	0.78
434439--434525	28	3.1	28	65	12	79	26	24	20	28	1.99
434258--434995	55	13.0	55	81	10	783	26	27	20	25	1.99
434232--434995	225	3.3	221	83	10	905	26	27	20	25	1.99
434777--434867	29	3.2	29	62	14	73	27	29	18	24	1.98
435784--435880	19	5.8	18	72	27	88	35	14	18	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435804--435893	13	6.0	13	71	26	63	35	16	17	30	1.93
435785--435892	32	3.4	32	96	0	189	34	15	18	31	1.92
438302--438424	51	2.4	52	86	8	171	32	25	11	30	1.91
438302--438424	53	2.4	51	86	8	169	32	25	11	30	1.91
438355--438499	79	1.8	78	85	7	204	29	26	13	31	1.93
438434--438558	52	2.4	52	80	7	146	28	27	12	32	1.92
438304--438583	130	2.1	133	91	5	455	29	26	12	31	1.92
438537--438614	28	2.8	28	82	7	88	23	35	19	21	1.96
438568--438772	79	2.6	79	80	3	216	22	31	17	27	1.97
439858--439911	20	2.7	19	88	11	74	33	12	18	35	1.89
442131--442182	19	2.6	21	90	6	81	38	13	15	32	1.86
442214--442239	13	2.0	13	100	0	52	30	15	15	38	1.88
444598--444836	51	4.6	51	84	2	300	30	25	10	33	1.90
444843--445018	80	2.2	80	89	3	266	27	26	15	29	1.96
444956--445069	51	2.2	51	82	3	140	32	27	10	29	1.90
445058--445129	28	2.6	28	86	8	94	23	34	18	23	1.96
445005--445208	107	1.9	107	81	4	250	26	27	14	30	1.95
444714--445341	237	2.6	238	81	5	682	27	26	13	32	1.94
450530--450587	13	4.9	13	70	23	56	32	12	15	39	1.84
450513--450587	33	2.4	31	88	4	114	33	13	13	40	1.83
453072--453144	20	3.7	19	85	7	76	28	15	16	39	1.89
453993--454047	19	2.8	20	71	23	53	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453983--454092	44	2.4	47	74	13	111	42	0	0	55	1.12
455891--455926	2	18.5	2	94	5	65	47	0	0	52	1.00
457959--458002	19	2.2	20	84	11	56	61	0	0	38	0.96
458019--458068	20	2.5	20	90	0	73	44	10	6	40	1.63
464235--464285	19	2.7	19	88	11	79	31	0	7	60	1.25
464234--464295	19	3.3	19	78	14	58	30	3	9	56	1.47
466259--466310	27	2.0	26	85	11	70	46	1	0	51	1.12
468550--468614	33	2.0	33	93	0	112	46	3	1	49	1.27
468910--468969	18	3.6	16	75	20	61	48	0	0	51	1.00
469120--469147	3	9.3	3	100	0	56	32	0	0	67	0.91
469917--469968	25	2.1	25	89	7	79	21	0	3	75	0.97
472531--472570	20	2.0	19	85	9	53	52	0	0	47	1.00
473431--473461	11	2.8	11	95	0	53	29	3	0	67	1.06
474538--474567	2	15.0	2	100	0	60	50	0	0	50	1.00
474822--474886	27	2.5	25	78	11	67	70	4	1	23	1.14
477975--478022	20	2.3	21	85	7	62	60	0	0	39	0.97
477975--478030	21	2.6	23	78	16	66	58	0	0	41	0.98
480175--480215	4	10.5	4	89	5	66	51	0	19	29	1.47
483617--483647	13	2.4	13	94	0	53	35	12	16	35	1.87
483597--483739	33	4.0	33	72	19	119	32	17	16	33	1.93
483693--483723	13	2.4	13	94	0	53	35	12	16	35	1.87
483614--483783	76	2.2	76	98	0	331	32	17	18	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483790--483816	13	2.1	13	100	0	54	40	14	14	29	1.86
484362--484420	18	3.3	18	67	19	52	33	28	1	35	1.68
484356--484429	35	2.1	36	94	2	132	29	29	2	37	1.71
484838--484894	21	2.7	21	91	0	96	33	8	19	38	1.82
484950--485017	19	3.9	19	78	21	85	35	11	14	38	1.83
484971--484995	13	1.9	13	100	0	50	36	16	16	32	1.90
484952--485014	32	2.0	32	96	0	117	34	12	15	36	1.86
485057--485082	13	2.0	13	100	0	52	30	15	15	38	1.88
485037--485103	33	2.0	33	88	0	98	25	14	16	43	1.86
487444--487819	51	7.4	51	72	11	261	30	24	11	32	1.91
487552--487587	17	2.1	17	94	0	63	22	38	25	13	1.91
487600--487822	103	2.1	105	81	4	274	30	24	10	33	1.90
487803--487878	27	2.8	28	89	2	109	23	34	21	21	1.97
487912--487966	28	1.9	29	88	3	85	20	27	20	32	1.97
487832--488034	77	2.6	78	84	3	248	24	30	17	28	1.97
492406--492457	23	2.3	23	82	0	59	55	5	1	36	1.35
492596--492626	2	15.5	2	93	0	53	51	3	0	45	1.17
492997--493032	17	2.1	17	89	0	54	0	16	0	83	0.65
494275--494717	32	13.8	32	93	0	717	15	18	33	31	1.93
494703--495494	27	28.9	27	89	3	1129	29	13	32	23	1.93
494703--495494	55	14.5	54	89	3	1129	29	13	32	23	1.93
494703--495494	82	9.6	81	89	3	1147	29	13	32	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496546--496571	13	2.0	13	100	0	52	0	0	15	84	0.62
502744--502795	23	2.2	24	79	3	61	53	5	1	38	1.36
503330--503359	10	3.0	10	95	0	51	0	13	0	86	0.57
503331--503365	16	2.1	17	89	5	54	0	17	0	82	0.66
510699--510755	19	2.9	19	89	5	78	35	17	17	29	1.93
510740--510766	13	2.1	13	100	0	54	40	14	14	29	1.86
510721--510783	32	1.9	33	90	3	101	39	15	17	26	1.90
515341--515376	2	18.5	2	88	5	56	47	0	2	50	1.15
515948--516007	11	5.5	11	76	18	54	65	0	0	35	0.93
515953--516018	24	2.8	24	79	9	80	62	0	0	37	0.96
515922--516018	48	2.0	49	82	6	117	59	0	1	39	1.04
525471--525513	19	2.1	21	83	8	54	48	6	0	44	1.29
532796--532820	2	12.5	2	100	0	50	52	0	0	48	1.00
533516--533551	19	1.9	18	94	5	63	38	0	2	58	1.13
533515--533554	14	2.9	15	82	10	50	42	0	5	52	1.23
533699--533743	23	1.9	23	82	13	56	42	0	0	57	0.98
535407--535437	2	15.5	2	100	0	62	51	0	0	48	1.00
535444--535562	62	2.0	62	81	6	145	26	21	9	42	1.82
535799--535848	24	2.1	24	82	10	59	36	0	16	48	1.46
536346--536371	13	2.0	13	100	0	52	38	15	15	30	1.88
543018--543094	21	3.7	21	85	3	102	35	11	16	36	1.86
543130--543197	19	3.9	19	72	21	67	35	11	14	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
543237--543262	13	2.0	13	100	0	52	30	15	15	38	1.88
543217--543279	33	1.9	33	86	0	90	25	14	17	42	1.87
545740--545812	27	2.7	27	86	2	92	23	32	21	21	1.98
545796--545964	52	3.3	50	78	4	176	31	25	10	31	1.90
545947--546028	28	2.9	28	83	7	96	24	32	17	25	1.96
545631--546023	211	1.9	211	86	4	569	29	27	12	30	1.93
548136--549403	638	2.0	638	99	0	2482	28	20	23	26	1.99
553361--553396	17	2.1	17	89	0	54	52	16	25	5	1.65
559059--559136	15	5.1	15	73	13	61	80	6	12	0	0.88
559069--559136	10	6.7	10	73	11	50	80	5	13	0	0.87

Tables:   1   2   3   4   5