Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold197
Parameters: 2 7 7 80 10 50 1000
Length:  573162

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 502 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
559058--559088
16
1.9
16
93
0
53
83
3
12
0
0.75
559057--559108
12
4.5
11
77
20
52
82
9
7
0
0.84
560102--560637
59
9.3
58
87
8
613
26
29
20
23
1.99
560102--560637
119
4.7
116
85
8
631
26
29
20
23
1.99
561368--561417
21
2.5
21
93
6
86
32
10
20
38
1.85
561455--561524
19
4.1
18
72
22
60
41
11
10
37
1.75
561478--561502
13
1.9
13
100
0
50
36
16
16
32
1.90
561461--561521
32
1.9
32
89
0
95
39
13
11
36
1.80
561564--561589
13
2.0
13
100
0
52
30
15
15
38
1.88
561544--561610
33
2.0
33
88
0
98
25
14
16
43
1.86
563957--564239
52
5.4
53
72
12
208
30
26
11
30
1.92
563962--564315
160
2.2
159
87
5
491
29
27
12
30
1.93
564222--564303
28
2.9
28
81
12
89
24
30
17
28
1.97
565974--566038
19
3.7
19
76
23
88
33
15
18
32
1.92
565993--566017
13
1.9
13
100
0
50
36
16
16
32
1.90
565974--566036
32
2.0
32
100
0
126
33
15
19
31
1.93
566059--566112
20
2.7
19
86
8
72
27
18
14
38
1.90
567033--567071
20
2.0
20
89
0
60
23
17
12
46
1.83
569847--570246
200
2.0
200
93
0
685
40
8
17
34
1.80
571202--571244
22
2.0
22
95
4
79
37
9
9
44
1.69
571483--571525
16
2.7
16
92
0
68
16
11
25
46
1.80
572494--572539
19
2.3
20
85
7
67
34
8
10
45
1.70

Tables:   1   2   3   4   5

The End!