genome.fa.s201.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold201
Parameters: 2 7 7 80 10 50 1000
Length:  841227

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 607 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264986--265043	26	2.4	24	80	8	73	62	3	0	34	1.12
272658--272891	97	2.4	97	90	1	362	28	30	13	27	1.94
280012--280062	26	2.0	26	96	0	93	37	7	17	37	1.79
281289--281625	169	2.0	170	87	6	495	43	17	8	30	1.78
281594--281636	13	3.3	13	83	0	50	55	20	0	23	1.43
281960--282004	16	2.9	16	81	15	58	57	2	0	40	1.11
288025--288103	1	79.0	1	75	0	68	87	5	5	2	0.74
288025--288091	15	4.5	15	83	10	84	88	5	5	0	0.65
288025--288096	29	2.3	30	86	9	92	87	5	5	1	0.72
288025--288103	19	4.1	19	80	7	81	87	5	5	2	0.74
289118--289372	26	9.3	26	62	16	88	28	32	19	19	1.96
289065--289980	55	16.4	55	88	5	1206	28	28	20	23	1.99
289266--289353	29	3.1	29	61	26	71	26	35	19	19	1.95
289824--289906	27	3.0	28	64	22	75	28	31	20	19	1.97
290869--290894	13	2.0	13	100	0	52	30	15	15	38	1.88
290849--290915	33	2.0	33	88	0	98	25	14	16	43	1.86
293368--293436	27	2.5	27	86	6	86	24	28	21	24	1.99
293423--293592	52	3.3	51	75	11	157	30	24	12	32	1.93
293576--293652	28	2.8	28	86	7	95	23	33	19	23	1.97
293254--293648	212	1.9	212	89	3	625	28	26	13	31	1.94
296743--296784	20	2.0	20	86	9	57	21	4	16	57	1.58
297735--297782	20	2.4	20	100	0	96	31	16	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300187--300253	33	2.0	33	88	11	102	32	17	13	35	1.89
300207--300237	13	2.4	13	94	0	53	35	12	16	35	1.87
300304--300368	32	2.0	32	84	3	85	40	16	16	26	1.90
304968--304994	13	2.1	13	100	0	54	40	14	14	29	1.86
306934--307032	52	1.9	52	91	0	162	30	17	13	39	1.87
307913--307984	20	3.7	19	87	5	90	37	18	15	29	1.91
307913--307989	39	2.0	40	86	2	111	36	16	16	29	1.92
307973--307997	13	1.9	13	100	0	50	32	16	20	32	1.94
309113--309139	14	1.9	14	100	0	54	29	14	14	40	1.86
309216--309242	13	2.1	13	100	0	54	29	14	14	40	1.86
309197--309261	32	2.0	32	90	3	103	27	18	15	38	1.91
309226--309282	19	2.9	19	86	2	78	33	17	15	33	1.92
309314--309363	20	2.4	21	87	9	68	36	14	20	30	1.91
312490--312515	13	2.0	13	100	0	52	30	15	15	38	1.88
312470--312533	32	2.0	33	90	3	103	28	14	15	42	1.86
313160--313250	39	2.3	41	79	9	107	34	20	5	39	1.76
314612--314654	20	2.1	20	82	4	50	9	27	44	18	1.80
315095--315132	13	3.0	12	88	11	58	31	18	18	31	1.95
321307--321332	13	2.0	13	100	0	52	30	15	15	38	1.88
321287--321348	32	1.9	33	90	3	99	27	12	16	43	1.84
327410--327472	21	3.2	20	70	21	60	36	4	28	30	1.78
328062--328116	20	2.7	21	77	11	60	34	14	18	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330149--330178	15	2.0	15	100	0	60	33	13	20	33	1.91
330288--330693	34	11.9	34	71	8	225	30	13	15	40	1.85
330800--330902	53	1.9	53	84	3	136	27	24	13	34	1.93
332447--332502	9	6.6	9	82	12	64	0	17	0	82	0.68
332444--332500	16	3.5	16	85	4	78	0	19	0	80	0.71
332463--332503	9	4.7	9	90	6	66	0	12	0	87	0.53
332447--332502	17	3.3	17	87	0	76	0	17	0	82	0.68
334273--334327	27	2.1	26	83	10	67	10	23	0	65	1.24
335956--336008	20	2.7	20	84	0	70	33	15	13	37	1.86
346302--346426	52	2.4	52	95	0	223	28	17	18	36	1.94
346302--346446	52	2.8	51	89	4	211	29	17	18	34	1.94
346435--346459	13	1.9	13	100	0	50	36	16	16	32	1.90
346524--346548	13	1.9	13	100	0	50	32	16	16	36	1.90
346502--346568	33	2.0	33	88	0	98	40	13	11	34	1.81
347324--347450	67	1.9	68	85	1	175	37	11	25	25	1.90
347463--348070	49	12.7	49	85	8	799	30	17	25	25	1.97
347397--348070	92	7.0	98	87	7	814	31	16	25	26	1.97
348070--348190	33	3.7	33	91	4	201	19	19	34	26	1.96
348176--348415	27	7.6	34	71	19	107	29	15	33	21	1.94
348188--348269	35	2.4	33	80	8	94	35	12	32	19	1.89
348237--348500	27	9.2	27	75	16	176	26	14	36	22	1.92
348176--348415	34	7.7	32	71	18	166	29	15	33	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348393--348463	25	2.8	25	97	0	133	14	14	40	30	1.85
348536--348659	63	2.0	61	84	6	160	29	16	31	21	1.96
348442--348660	31	6.9	31	76	12	194	28	15	34	21	1.94
348475--348654	94	1.9	96	86	6	260	27	17	33	21	1.96
352166--352223	20	3.0	20	84	2	73	46	12	10	31	1.74
359358--360308	28	33.5	28	84	3	1073	29	30	16	23	1.97
359358--360328	113	8.5	112	84	3	1122	29	29	16	23	1.97
361212--361262	20	2.5	20	83	0	66	37	11	11	39	1.79
367600--367715	58	2.0	58	85	9	157	31	12	11	45	1.76
368027--368053	13	2.1	13	100	0	54	29	14	14	40	1.86
369677--369711	15	2.3	15	90	0	52	45	0	25	28	1.54
370224--370296	20	3.6	20	81	3	101	35	13	19	31	1.91
370242--370317	21	3.7	21	80	3	100	42	11	17	28	1.84
370224--370317	41	2.3	41	98	0	179	39	12	18	29	1.88
370356--370381	13	2.0	13	100	0	52	38	15	15	30	1.88
374442--374472	15	2.1	15	93	0	53	48	16	22	12	1.80
376489--376567	20	3.7	21	75	15	72	26	13	15	44	1.84
376554--376592	13	3.0	13	96	0	69	30	17	15	35	1.91
378253--378324	36	2.0	36	97	0	135	33	2	23	40	1.69
378945--379017	20	3.6	20	81	3	101	35	13	19	31	1.91
378963--379038	21	3.7	21	80	3	100	42	11	17	28	1.84
378945--379038	41	2.3	41	98	0	179	39	12	18	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379077--379102	13	2.0	13	100	0	52	38	15	15	30	1.88
382742--382772	16	1.9	16	93	0	53	54	0	9	35	1.33
384224--384263	13	3.1	13	92	0	71	32	15	15	37	1.88
386730--386756	13	2.1	13	100	0	54	29	14	14	40	1.86
386807--386831	13	1.9	13	100	0	50	36	16	16	32	1.90
396700--396785	37	2.3	37	80	9	95	30	20	13	34	1.92
396764--397174	226	1.8	226	92	1	698	32	10	16	40	1.82
400602--400991	61	6.3	61	78	9	350	26	27	17	29	1.97
400601--400997	127	3.2	123	81	12	440	26	27	17	28	1.97
400978--401071	42	2.2	43	88	1	145	25	29	8	36	1.86
401101--401372	62	4.4	62	90	0	400	25	23	18	31	1.97
402213--402282	13	4.9	13	77	19	77	37	14	15	32	1.88
402226--402309	32	2.6	32	94	0	141	34	13	16	35	1.88
402354--402381	13	2.2	13	100	0	56	28	14	17	39	1.89
481763--481897	50	2.7	50	87	2	173	28	17	13	40	1.87
483066--483141	21	3.7	21	80	3	100	28	17	11	42	1.84
483087--483159	20	3.6	20	81	3	101	31	19	13	35	1.91
483066--483159	41	2.3	41	98	0	179	29	18	12	39	1.88
485611--485649	13	3.0	13	88	0	60	35	12	17	33	1.88
485635--485713	20	3.7	20	78	15	77	44	15	15	25	1.85
485851--485882	8	4.0	8	100	0	64	62	25	0	12	1.30
489570--489614	21	2.1	21	84	8	56	22	20	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491828--491853	13	2.0	13	100	0	52	30	15	15	38	1.88
491892--491967	21	3.7	21	80	3	100	28	17	11	42	1.84
491913--491985	20	3.6	20	81	3	101	31	19	13	35	1.91
491892--491985	41	2.3	41	98	0	179	29	18	12	39	1.88
492788--492913	60	2.1	60	90	0	198	21	30	6	41	1.78
494322--494603	80	3.5	81	81	7	319	29	24	12	33	1.92
494542--494655	51	2.2	51	85	0	156	29	29	9	30	1.89
497942--497995	20	2.7	20	85	0	72	35	12	12	38	1.82
511929--511980	1	52.0	1	76	0	50	88	11	0	0	0.52
511932--511980	8	5.8	8	83	11	62	87	12	0	0	0.54

Tables:   1   2   3   4   5   6