genome.fa.s201.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold201
Parameters: 2 7 7 80 10 50 1000
Length:  841227

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 607 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511930--511969	10	4.3	10	87	12	59	90	10	0	0	0.47
511932--511980	18	2.8	17	90	6	80	87	12	0	0	0.54
511929--511980	17	3.0	17	88	2	77	88	11	0	0	0.52
511930--511980	26	1.9	26	92	4	84	88	11	0	0	0.52
513229--513836	28	21.1	28	83	8	686	29	30	17	23	1.97
513229--513836	117	5.3	115	85	5	786	29	30	17	23	1.97
515597--515629	15	2.2	15	100	0	66	21	12	9	57	1.62
520593--520792	79	2.5	79	80	0	211	30	16	28	25	1.96
520747--520818	28	2.6	28	88	0	99	23	19	34	22	1.96
520807--521143	52	6.4	52	68	18	187	31	12	25	29	1.93
520963--521033	27	2.6	27	86	2	88	23	21	30	23	1.99
520693--521085	107	3.7	106	73	12	336	30	14	27	27	1.95
520740--521145	212	1.9	212	89	4	631	31	13	27	28	1.94
521022--521140	51	2.3	53	84	7	145	33	10	22	32	1.89
523531--523598	19	3.9	18	76	23	83	38	14	11	35	1.83
523553--523577	13	1.9	13	100	0	50	32	16	16	36	1.90
523534--523596	32	2.0	32	96	0	117	36	15	12	34	1.86
525686--525770	26	3.2	26	65	21	68	29	28	14	28	1.95
525615--525926	62	5.3	62	79	12	327	25	26	18	29	1.98
525675--525780	53	2.0	53	96	0	194	26	32	14	27	1.94
525616--525824	115	1.8	115	92	0	355	23	28	18	29	1.98
525731--525926	57	3.3	60	79	8	240	25	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526165--526220	21	2.7	21	100	0	112	35	10	14	39	1.81
526258--526324	33	2.0	33	85	0	89	34	10	13	41	1.79
526367--526391	13	1.9	13	100	0	50	32	16	16	36	1.90
526400--526523	52	2.4	52	93	4	207	34	18	17	29	1.94
529597--529832	62	4.0	61	72	17	230	23	26	19	30	1.98
529842--530116	84	3.3	82	75	17	259	20	26	10	42	1.84
529842--530145	40	7.3	43	71	13	181	21	25	10	42	1.85
530890--531011	30	4.4	30	75	19	129	27	18	17	37	1.92
530867--530979	50	2.3	50	90	0	172	27	15	15	40	1.88
530890--531059	80	2.1	80	91	0	268	26	17	17	38	1.91
530965--531080	50	2.3	50	88	2	171	25	17	16	40	1.90
533439--533822	80	4.8	79	78	7	330	28	25	12	33	1.92
533439--533813	160	2.3	160	83	2	459	29	25	12	32	1.92
534944--534970	14	1.9	14	100	0	54	44	14	3	37	1.63
542460--542530	35	2.0	35	91	0	115	38	9	8	43	1.68
546593--546634	17	2.6	16	78	14	50	52	2	11	33	1.51
557036--557063	12	2.3	12	100	0	56	39	0	17	42	1.50
559136--559252	20	5.7	19	76	11	108	35	13	17	32	1.89
564211--564261	19	2.6	20	87	3	77	25	17	15	41	1.89
564777--564936	31	4.9	33	83	8	159	41	11	18	29	1.85
565461--565516	21	2.7	21	75	8	60	33	7	10	48	1.65
567141--567203	16	3.9	16	77	6	56	46	23	11	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567175--567215	16	2.6	16	88	0	55	51	29	7	12	1.66
567555--567601	20	2.4	19	86	10	67	51	12	4	31	1.59
571656--571760	53	2.0	53	94	0	183	34	22	14	28	1.93
573959--573985	2	13.5	2	100	0	54	51	0	0	48	1.00
574062--574132	16	4.6	15	73	22	58	53	2	0	43	1.15
574074--574135	32	1.9	33	90	3	99	53	1	0	45	1.10
574062--574132	14	4.6	16	73	26	55	53	2	0	43	1.15
574071--574132	17	3.8	17	73	25	62	53	3	0	43	1.17
574603--574628	5	5.2	5	100	0	52	42	0	0	57	0.98
576220--576257	19	2.1	19	95	5	69	34	5	21	39	1.76
583472--583559	20	4.8	18	74	24	69	43	17	12	27	1.84
583509--583571	13	5.3	12	71	21	53	39	19	14	26	1.90
583492--583571	33	2.4	33	97	0	151	41	17	13	27	1.87
583664--583689	13	2.0	13	100	0	52	30	15	15	38	1.88
583644--583711	33	2.1	32	91	2	109	36	16	13	33	1.87
589853--589891	13	3.0	13	88	0	60	30	17	15	35	1.91
590023--590063	22	2.0	20	86	13	57	31	21	4	41	1.74
592471--592570	33	3.1	33	91	1	166	38	18	12	32	1.87
593550--594051	155	3.3	153	77	6	480	38	18	17	25	1.93
594462--594494	12	3.0	11	87	12	50	24	0	0	75	0.80
594463--594496	15	2.2	16	89	5	52	20	0	0	79	0.73
594508--594562	25	2.2	26	75	12	62	32	5	9	52	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596194--596637	167	2.7	164	84	4	550	51	6	10	31	1.62
603530--603920	79	5.0	79	81	5	391	32	12	26	28	1.92
608323--608348	13	2.0	13	100	0	52	38	15	15	30	1.88
608301--608368	33	2.1	32	89	8	102	33	13	17	35	1.89
608401--608453	20	2.6	21	84	3	72	28	16	15	39	1.89
608441--608465	13	1.9	13	100	0	50	36	16	16	32	1.90
609022--609066	22	2.0	22	95	0	81	33	31	0	35	1.58
610450--610490	20	2.0	21	90	4	66	4	26	48	19	1.69
611136--611161	8	3.2	8	100	0	52	61	23	0	15	1.33
617094--617118	13	1.9	13	100	0	50	36	16	16	32	1.90
617071--617138	33	2.1	32	91	2	109	30	14	19	35	1.92
617171--617222	20	2.5	21	84	3	70	26	17	15	40	1.89
621000--621052	22	2.4	21	87	6	70	64	0	0	35	0.94
621007--621065	10	5.7	10	76	7	55	66	1	0	32	1.02
621000--621066	21	3.1	22	82	6	75	62	1	0	35	1.04
623401--623459	2	30.0	2	93	3	102	49	0	1	49	1.11
627882--627997	61	1.9	60	92	1	196	30	10	16	43	1.81
628575--628622	24	2.0	25	95	4	89	39	16	16	27	1.90
632831--632879	25	2.0	25	95	0	89	55	6	2	36	1.37
632840--632881	13	3.3	13	75	18	52	52	4	0	42	1.22
651230--651284	20	2.5	24	77	19	57	32	0	0	67	0.91
651315--651458	72	1.9	76	87	6	215	35	6	2	56	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655365--655399	16	2.2	16	100	0	70	42	5	0	51	1.25
655369--655410	16	2.8	16	89	7	61	50	4	0	45	1.23
657686--657748	19	3.7	18	74	24	64	34	12	15	36	1.86
657705--657729	13	1.9	13	100	0	50	36	16	16	32	1.90
657686--657756	32	2.2	32	94	0	124	33	12	16	36	1.87
657801--657828	13	2.2	13	100	0	56	28	14	17	39	1.89
671723--671806	11	7.9	11	73	16	54	82	13	4	0	0.83
671721--671794	24	3.2	23	86	5	105	82	12	5	0	0.83
673233--673379	29	5.0	30	88	6	187	28	28	15	27	1.96
673237--673379	59	2.5	59	86	4	184	28	28	16	26	1.97
673370--673757	95	4.1	93	82	9	453	22	25	19	32	1.97
673376--673803	49	8.8	49	77	9	414	23	25	18	32	1.97
673481--673803	144	2.2	149	87	5	458	22	26	18	31	1.97
673562--673803	101	2.4	101	91	0	376	23	26	18	31	1.97
675679--675731	19	2.7	20	86	13	74	39	16	15	28	1.89
675700--675770	32	2.2	32	92	0	115	36	12	15	35	1.86
675700--675749	13	3.1	17	72	27	54	38	12	16	34	1.85
675815--675842	13	2.2	13	100	0	56	28	14	17	39	1.89
685711--686204	149	3.3	148	75	7	419	35	17	20	26	1.95
687636--687675	11	3.6	11	86	6	55	0	20	0	80	0.72
688205--688710	167	3.0	163	77	9	495	50	7	11	31	1.65
689874--689903	16	1.9	15	93	6	51	23	0	6	70	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689700--690500	406	2.0	406	90	0	1280	36	11	12	39	1.79
691302--691357	19	2.9	19	86	2	76	35	17	16	30	1.92
691342--691368	13	2.1	13	100	0	54	40	14	14	29	1.86
699695--699727	14	2.4	14	100	0	66	39	24	18	18	1.92
700124--700177	20	2.7	20	100	0	108	37	18	14	29	1.91
700842--700969	58	2.2	58	76	2	132	46	13	11	28	1.78
706969--706998	9	3.3	9	100	0	60	56	0	0	43	0.99
711472--711517	13	3.5	13	82	5	56	58	2	0	39	1.10
711458--711524	27	2.5	27	80	4	73	56	2	0	40	1.14
712469--712540	21	3.5	20	78	3	63	43	11	12	33	1.78

Tables:   1   2   3   4   5   6