genome.fa.s226.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold226
Parameters: 2 7 7 80 10 50 1000
Length:  1170647

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256653--256708	26	2.1	26	87	9	78	39	0	1	58	1.08
256653--256757	32	3.2	33	80	9	108	40	0	1	57	1.16
257325--257369	16	2.8	16	86	6	56	42	0	6	51	1.28
257780--257834	3	18.3	3	100	0	110	67	0	0	32	0.91
259543--259574	2	16.0	2	93	0	55	50	3	0	46	1.17
260253--260282	15	2.0	15	93	0	51	33	23	0	43	1.54
260553--260595	3	14.0	3	95	4	77	2	32	0	65	1.06
261604--261629	13	2.0	13	100	0	52	46	7	0	46	1.31
262004--262045	17	2.5	18	81	14	54	61	0	0	38	0.96
262479--262545	30	2.1	32	76	21	77	44	1	1	52	1.19
262478--262586	31	3.9	29	80	14	115	40	0	1	56	1.16
262501--262587	26	3.1	27	82	14	106	41	1	1	56	1.14
262539--262594	26	2.2	26	83	6	69	46	0	1	51	1.11
263325--263368	2	22.5	2	86	13	65	50	2	0	47	1.13
264390--264447	18	3.2	17	73	19	55	39	0	0	60	0.97
265314--265342	14	2.1	14	100	0	58	48	6	17	27	1.72
268928--268961	9	3.7	9	88	4	50	52	0	0	47	1.00
269757--269783	2	13.5	2	100	0	54	51	0	0	48	1.00
270068--270109	14	3.1	14	77	16	52	40	0	0	59	0.97
270067--270122	20	2.8	19	84	10	67	41	0	3	55	1.17
270285--270346	12	5.8	11	69	19	51	53	0	0	46	1.00
271341--271381	21	1.9	21	85	14	57	58	2	0	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271560--271646	24	3.6	23	73	15	70	55	0	2	42	1.12
273495--273519	2	12.5	2	100	0	50	48	0	0	52	1.00
273966--274009	17	2.4	18	81	11	54	56	2	0	40	1.11
273978--274031	8	6.5	8	83	14	56	50	0	0	50	1.00
273978--274034	17	3.4	17	79	13	73	50	0	0	49	1.00
274595--274627	2	16.5	2	93	0	57	48	0	0	51	1.00
274800--274869	26	2.8	25	78	4	79	60	2	1	35	1.21
274847--274899	16	3.5	16	75	12	58	49	1	0	49	1.12
274806--274860	20	2.7	20	83	10	67	63	3	0	32	1.12
274873--274921	19	2.7	19	81	18	68	42	0	0	57	0.99
275345--275384	17	2.3	17	86	4	53	67	0	7	25	1.16
276143--276188	3	15.3	3	95	0	83	67	2	0	30	1.03
276535--276565	3	10.3	3	92	0	53	32	3	0	64	1.09
276675--276702	3	9.3	3	100	0	56	32	0	0	67	0.91
276538--276800	137	2.0	124	87	9	373	36	11	5	46	1.63
277146--277174	2	14.5	2	100	0	58	51	0	0	48	1.00
277731--277774	13	3.3	13	87	3	52	45	0	6	47	1.29
277905--278305	199	2.0	198	96	0	739	40	10	19	28	1.85
279773--279833	19	3.4	17	78	17	61	60	1	0	37	1.07
279780--279833	19	2.9	18	83	13	65	61	0	0	38	0.96
279767--279833	18	3.7	18	80	7	66	61	1	0	37	1.05
280236--280354	31	3.9	31	79	10	113	37	0	1	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280248--280363	60	1.9	61	84	8	157	38	0	1	59	1.08
280819--280848	2	15.5	2	93	6	53	50	0	0	50	1.00
282157--282190	17	2.0	17	94	0	59	38	0	0	61	0.96
284586--284683	48	2.0	48	100	0	196	34	25	9	30	1.87
284846--284885	20	2.0	20	90	9	64	52	0	0	47	1.00
285888--285918	2	15.5	2	100	0	62	51	0	0	48	1.00
292924--292954	2	15.5	2	100	0	62	48	0	0	51	1.00
293755--293802	12	3.8	12	76	17	53	27	0	0	72	0.84
293761--293795	16	2.2	16	90	10	54	22	0	0	77	0.78
293772--293825	17	3.3	17	73	14	51	33	0	1	64	1.04
293737--293810	24	3.1	23	75	7	67	31	1	1	66	1.09
293992--294034	9	5.4	8	81	18	54	62	2	0	34	1.08
301489--301514	10	2.6	10	100	0	52	53	0	46	0	1.00
301673--301765	26	3.5	26	68	27	63	53	0	0	46	1.00
301672--301765	28	3.4	26	78	16	93	54	0	0	45	0.99
305599--305685	6	14.5	6	71	13	63	63	0	1	35	1.02
305621--305705	11	8.1	11	68	19	56	62	0	1	36	1.03
305652--305758	47	2.3	45	81	13	112	55	0	0	43	1.06
305680--305741	19	3.4	19	72	22	53	53	0	0	46	1.00
305703--305752	15	3.4	14	78	10	55	52	0	0	48	1.00
305961--306007	14	3.1	15	78	9	51	53	0	0	46	1.00
306808--306874	32	2.1	32	100	0	134	53	14	19	11	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307870--308007	45	3.2	42	74	20	126	57	0	0	42	0.98
307868--307986	18	7.8	16	68	28	64	56	0	0	43	0.99
308413--308442	12	2.5	12	88	0	51	33	0	0	66	0.92
308803--308831	6	4.8	6	100	0	58	34	17	48	0	1.47
309145--309201	14	3.9	15	78	17	57	42	0	0	57	0.98
309224--309282	22	2.6	24	76	15	63	44	3	0	52	1.17
309292--309335	14	2.9	16	83	10	65	45	0	0	54	0.99
309271--309335	30	2.2	30	86	8	89	43	0	0	56	0.99
309291--309342	14	3.6	14	77	10	59	44	1	0	53	1.11
309525--309610	24	3.3	24	68	28	61	58	0	0	41	0.98
309526--309583	16	3.7	16	77	13	57	60	0	0	39	0.97
310925--310967	22	2.0	22	86	4	61	62	0	0	37	0.95
310924--310970	21	2.2	20	82	10	58	63	0	0	36	0.94
310934--310985	24	2.2	24	82	6	61	63	3	1	30	1.23
311256--311306	16	2.8	17	78	21	59	58	0	0	41	0.98
311252--311336	20	4.2	20	78	13	93	60	0	0	40	0.97
311255--311312	9	6.9	9	74	18	54	58	0	0	41	0.98
311256--311324	14	4.9	15	71	20	60	59	0	0	40	0.97
311304--311343	20	2.0	20	85	0	53	62	0	0	37	0.95
311346--311396	14	3.5	14	84	7	66	49	1	0	49	1.12
311612--311656	16	2.9	15	83	9	63	28	0	6	64	1.19
311669--311716	15	3.1	15	81	6	51	52	0	2	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311718--311792	16	4.8	15	73	12	62	33	0	4	62	1.14
311718--311792	32	2.4	30	86	6	96	33	0	4	62	1.14
315815--315859	19	2.5	17	79	10	54	66	0	0	33	0.92
316397--316440	22	2.0	22	86	8	63	72	0	0	27	0.85
316750--316802	26	1.9	28	85	11	74	52	1	1	43	1.23
316791--316833	14	3.1	14	83	6	52	67	0	0	32	0.91
317312--317346	2	17.5	2	100	0	70	51	0	48	0	1.00
320660--320705	20	2.3	21	85	14	62	28	2	0	69	1.00
323127--323479	181	2.0	174	82	9	419	43	3	3	48	1.40
323709--323747	20	1.9	21	94	5	71	46	0	0	53	1.00
328586--328650	14	5.1	14	68	21	52	56	0	0	43	0.99
328589--328639	23	2.2	24	89	6	79	58	0	0	41	0.98
328589--328650	22	2.8	21	83	11	63	58	0	0	41	0.98
328823--328869	18	2.7	18	84	15	55	68	0	0	31	0.90
328829--328929	20	4.8	20	76	6	85	63	1	0	34	1.06
328829--328927	40	2.3	43	81	10	114	62	2	0	35	1.07
328905--328966	31	1.9	33	90	6	101	58	1	0	40	1.08
329613--329649	2	18.5	2	100	0	74	48	0	0	51	1.00
330921--330973	14	3.6	14	80	17	54	73	1	0	24	0.93
330947--330994	21	2.3	22	82	13	66	64	0	6	29	1.18
331329--331366	15	2.5	15	83	8	51	39	0	0	60	0.97
331542--331569	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336003--336051	11	4.5	11	78	21	59	69	2	0	28	1.00
336251--336326	36	2.1	36	92	0	125	32	17	18	31	1.94
337055--337100	15	3.1	15	84	9	67	23	21	28	26	1.99
340397--340480	3	26.7	3	79	13	73	67	1	2	28	1.10
340397--340480	16	5.3	16	76	15	86	67	1	2	28	1.10
340394--340480	37	2.4	37	86	11	126	67	1	2	28	1.10
340921--340962	20	2.1	20	91	8	68	38	0	0	61	0.96
341582--341626	22	2.1	22	87	4	65	75	6	2	15	1.11
341831--341894	26	2.4	27	75	21	71	37	1	0	60	1.06
342431--342474	23	2.0	23	86	4	63	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8