genome.fa.s226.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold226
Parameters: 2 7 7 80 10 50 1000
Length:  1170647

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
788313--788360	18	2.8	16	74	20	51	68	0	0	31	0.90
788351--788427	25	3.0	24	75	11	64	50	0	0	49	1.00
788350--788416	16	3.9	18	72	20	63	52	0	0	47	1.00
788338--788427	34	2.6	34	79	10	103	55	0	0	44	0.99
788362--788427	16	4.1	15	77	14	60	51	0	0	48	1.00
791412--791445	2	17.0	2	93	0	59	47	0	2	50	1.16
803896--803925	7	4.3	7	100	0	60	16	0	30	53	1.44
807103--807152	14	3.6	14	75	5	57	54	0	0	46	1.00
809588--809695	38	2.8	38	76	14	107	26	12	19	40	1.88
809588--809672	37	2.3	38	80	13	97	27	16	18	37	1.92
810628--810666	12	3.1	13	85	14	55	28	2	0	69	1.02
811600--811643	9	4.9	9	83	10	63	52	2	0	45	1.13
811591--811645	27	2.0	27	96	0	101	50	3	0	45	1.19
815094--815134	2	20.5	2	100	0	82	48	0	0	51	1.00
815695--815757	28	2.2	28	88	0	90	22	3	15	58	1.51
815754--815798	24	1.9	24	90	4	74	20	6	28	44	1.76
821276--821327	18	2.9	18	80	8	54	51	1	0	46	1.12
832333--832361	14	2.0	15	93	6	51	51	0	0	48	1.00
835636--835676	2	20.5	2	94	0	73	48	0	2	48	1.14
844794--844823	7	4.3	7	100	0	60	16	0	30	53	1.44
847998--848047	13	3.8	13	83	2	64	54	0	0	46	1.00
850474--850581	38	2.8	38	76	14	107	26	12	19	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
850474--850558	37	2.3	38	80	13	97	27	16	18	37	1.92
851516--851554	12	3.1	13	85	14	55	28	2	0	69	1.02
852488--852531	9	4.9	9	83	10	63	52	2	0	45	1.13
852479--852533	27	2.0	27	96	0	101	50	3	0	45	1.19
854707--854758	19	2.8	19	77	11	54	51	1	0	46	1.12
855996--856036	2	20.5	2	100	0	82	48	0	0	51	1.00
856598--856660	28	2.2	28	88	0	90	22	3	15	58	1.51
856657--856702	24	1.9	24	90	0	74	21	6	28	43	1.77
862184--862217	17	1.9	18	94	5	61	44	0	0	55	0.99
867682--867710	2	14.5	2	100	0	58	48	0	0	51	1.00
873022--873058	20	2.0	19	85	15	51	56	2	0	40	1.13
873107--873133	2	13.5	2	100	0	54	51	0	0	48	1.00
874991--875045	18	3.2	18	75	12	53	30	3	0	65	1.10
882110--882153	21	2.0	22	82	4	54	52	2	0	45	1.13
884962--884989	3	9.3	3	100	0	56	35	0	32	32	1.58
885327--885363	5	7.4	5	93	0	56	18	24	18	37	1.94
885476--885511	2	18.0	2	94	0	63	0	0	52	47	1.00
887963--888003	6	6.8	6	82	0	55	19	17	48	14	1.81
888515--888544	13	2.3	13	100	0	60	63	10	0	26	1.26
891231--891272	21	2.1	19	86	13	57	59	0	0	40	0.97
898611--898640	5	5.8	5	92	7	51	40	0	0	60	0.97
898634--898706	29	2.7	26	73	20	69	45	1	0	53	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898646--898709	30	2.2	29	83	13	78	48	1	0	50	1.10
898846--898922	23	3.1	25	81	12	97	59	0	0	40	0.97
898856--898940	24	3.5	23	79	17	84	60	0	0	40	0.97
899526--899572	22	2.1	22	92	0	76	53	2	2	42	1.25
900255--900310	3	18.7	3	92	0	94	62	0	1	35	1.06
902002--902089	20	4.5	19	70	14	54	37	1	1	60	1.12
903840--903871	11	3.0	11	95	4	57	0	6	0	93	0.34
903839--903869	15	2.0	16	93	6	55	0	9	0	90	0.46
905178--905203	13	2.0	13	100	0	52	76	0	0	23	0.78
906675--906707	2	16.5	2	100	0	66	51	0	0	48	1.00
906766--906841	42	1.9	38	82	12	91	46	2	0	51	1.15
913308--913339	16	2.0	16	100	0	64	37	6	31	25	1.81
914632--915117	210	2.4	203	85	7	630	25	13	12	48	1.78
915351--915391	2	20.5	2	89	0	64	46	2	0	51	1.14
919430--919464	2	17.5	2	100	0	70	48	0	0	51	1.00
923420--923502	43	1.9	43	90	0	130	45	12	12	30	1.77
929891--929922	2	16.0	2	100	0	64	50	0	0	50	1.00
930100--930124	4	6.2	4	100	0	50	24	24	0	52	1.48
932174--932283	2	55.0	2	88	0	166	45	0	4	49	1.29
935624--935680	21	2.9	19	84	7	62	59	0	1	38	1.08
935628--935683	20	2.8	19	75	21	53	60	0	1	37	1.07
935626--935736	39	3.0	37	77	20	124	58	0	0	40	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935653--935727	34	2.3	32	81	16	93	58	0	0	41	0.98
936186--936223	2	19.0	2	100	0	76	50	0	0	50	1.00
936299--936323	2	12.5	2	100	0	50	48	0	0	52	1.00
937224--937303	27	2.9	27	72	23	76	41	0	0	58	0.98
937209--937306	15	6.7	15	67	21	57	39	0	1	59	1.04
939510--939541	3	10.7	3	100	0	64	31	0	0	68	0.90
948466--948497	2	16.0	2	100	0	64	0	50	0	50	1.00
949546--949698	76	2.0	76	98	0	297	35	20	11	31	1.89
951982--952016	2	17.5	2	87	0	52	0	5	42	51	1.25
951982--952016	14	2.5	14	100	0	70	0	5	42	51	1.25
957717--957893	88	2.0	89	97	1	338	52	18	12	15	1.74
963631--963684	10	5.6	10	76	22	53	46	0	0	53	1.00
963647--963693	21	2.3	21	85	10	62	48	2	2	46	1.25
963657--963699	22	2.0	21	81	4	50	53	2	2	41	1.26
964355--964385	2	15.5	2	100	0	62	51	0	0	48	1.00
965319--965397	30	2.6	31	77	15	85	55	1	1	41	1.16
965383--965460	23	3.5	22	77	5	68	57	3	0	38	1.17
965405--965468	21	3.0	21	81	6	67	59	4	0	35	1.18
966705--966731	11	2.5	11	100	0	54	33	0	0	66	0.92
966786--966986	66	3.0	66	89	0	312	50	7	2	38	1.47
967681--967728	25	2.0	23	84	8	60	52	0	2	45	1.12
968626--968664	20	2.0	20	85	10	53	58	2	2	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968650--968696	15	3.3	14	80	11	51	59	0	2	38	1.09
969447--969472	13	2.0	13	100	0	52	38	0	0	61	0.96
969632--969690	27	2.2	27	82	17	79	44	0	0	55	0.99
969647--969699	20	2.7	20	75	13	56	39	0	0	60	0.97
970319--970361	19	2.3	18	81	14	52	46	0	0	53	1.00
970319--970364	18	2.5	19	82	13	60	45	0	0	54	0.99
970333--970400	29	2.5	28	77	17	72	42	0	2	54	1.15
970333--970401	27	2.5	28	80	13	72	42	0	2	55	1.15
970843--970910	22	2.8	26	66	20	67	55	0	0	44	0.99
970843--970912	24	3.0	22	68	25	54	55	0	0	44	0.99
971348--971382	2	17.5	2	87	0	52	48	5	0	45	1.26
972444--972483	21	2.0	20	85	5	53	47	0	7	45	1.31
973099--973157	4	14.2	4	84	12	75	74	0	25	0	0.82
981803--981894	34	2.7	34	77	14	84	44	0	1	54	1.07
981853--981898	19	2.4	20	85	7	60	41	0	0	58	0.98
981856--981915	13	4.5	13	82	10	50	41	0	0	58	0.98
981980--982035	17	3.1	17	82	14	60	57	1	1	39	1.20
982044--982129	37	2.3	38	86	8	113	37	0	1	61	1.04
988346--988372	13	2.1	13	100	0	54	22	0	14	62	1.31
989043--989149	40	2.6	41	81	13	121	50	0	0	48	1.07
990944--990991	25	1.9	25	82	0	60	43	0	4	52	1.20
991892--991948	24	2.5	23	81	16	66	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991906--991958	24	2.3	24	83	6	65	52	0	1	45	1.11
992346--992406	16	3.6	17	78	8	54	57	0	0	42	0.98
993063--993120	18	3.3	18	66	22	50	51	12	1	34	1.49
995284--995337	18	2.9	18	81	18	67	66	0	1	31	1.02
995284--995338	19	2.9	19	76	20	62	67	0	1	30	1.01
995311--995366	11	5.2	11	80	4	69	66	1	0	32	1.03
997036--997072	6	6.2	6	87	12	58	48	32	0	18	1.49
997036--997072	13	3.1	12	92	7	58	48	32	0	18	1.49
997036--997072	19	2.1	17	90	10	56	48	32	0	18	1.49
997334--997373	2	20.0	2	100	0	80	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8