genome.fa.s226.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold226
Parameters: 2 7 7 80 10 50 1000
Length:  1170647

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629299--629359	21	3.1	19	81	11	61	42	4	3	49	1.40
629574--629606	2	16.5	2	100	0	66	48	0	0	51	1.00
629931--629972	15	2.8	15	85	7	50	35	4	2	57	1.33
630120--630162	22	2.0	22	86	9	61	44	6	18	30	1.76
630414--630438	13	1.9	13	100	0	50	92	0	8	0	0.40
632018--632077	2	30.0	2	96	0	111	48	1	0	50	1.11
632516--632553	2	19.0	2	100	0	76	50	0	50	0	1.00
642633--642660	2	14.0	2	100	0	56	0	0	50	50	1.00
642660--642686	2	13.5	2	100	0	54	48	0	0	51	1.00
646062--646100	7	5.6	7	90	0	60	25	10	33	30	1.89
650433--650465	2	16.5	2	100	0	66	48	0	0	51	1.00
650830--650869	20	1.9	21	90	10	64	40	0	2	57	1.12
650862--650904	21	2.0	21	86	8	61	55	0	0	44	0.99
650840--650924	29	2.7	33	81	13	92	48	0	0	51	1.00
651041--651180	29	4.9	29	75	12	121	59	0	0	40	1.03
651031--651109	11	7.4	11	75	15	60	64	1	0	34	1.02
651034--651170	33	4.4	33	70	22	100	59	0	0	39	1.02
651606--651664	30	2.0	30	83	6	75	47	0	1	50	1.11
651858--651938	16	5.1	16	78	0	54	45	14	9	29	1.77
651871--651984	32	3.6	32	75	6	108	51	9	4	34	1.54
651913--651976	16	4.1	16	78	9	69	56	9	0	34	1.32
651945--651984	15	2.7	15	84	0	62	57	2	0	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652287--652353	26	2.8	23	84	13	75	52	1	0	46	1.09
660600--660627	3	9.3	3	100	0	56	67	0	0	32	0.91
664289--664323	18	1.9	18	94	0	61	20	0	8	71	1.11
664293--664337	15	3.1	15	84	6	58	24	0	4	71	1.05
664335--664368	16	2.1	16	88	0	50	52	2	2	41	1.31
664418--664482	28	2.3	28	82	15	73	52	4	0	43	1.22
664431--664488	16	3.7	16	77	22	61	46	6	0	46	1.29
672485--672521	18	2.1	18	100	0	74	45	21	5	27	1.73
676764--676892	66	2.0	66	90	0	204	31	17	20	30	1.96
680540--680581	22	1.9	22	85	9	59	50	9	16	23	1.75
681551--681588	2	19.0	2	89	10	60	50	2	47	0	1.15
683070--683102	12	2.8	12	86	4	50	42	0	0	57	0.98
685600--685647	20	2.3	21	79	10	55	64	0	4	31	1.12
690162--690200	15	2.3	18	87	12	57	69	0	0	30	0.89
690661--690705	21	2.2	21	88	4	65	48	0	0	51	1.00
696084--696132	25	2.0	24	84	4	62	57	6	4	32	1.42
698434--698479	2	23.0	2	86	0	65	47	2	4	45	1.34
699045--699087	16	2.8	16	83	13	54	51	2	0	46	1.13
699731--699780	20	2.7	18	79	11	64	30	2	0	68	1.01
699751--699838	3	30.0	3	78	17	87	29	2	0	68	1.02
700227--700267	20	2.0	20	86	9	57	41	0	2	56	1.13
701829--701880	25	2.1	25	82	7	61	36	3	1	57	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701921--701955	5	7.2	5	93	6	63	60	0	0	40	0.97
702076--702102	14	1.9	14	100	0	54	29	3	7	59	1.42
702185--702234	16	3.1	17	74	11	50	58	0	0	42	0.98
703408--703450	3	14.3	3	95	0	77	62	0	34	2	1.08
703794--703880	27	3.1	28	77	12	81	41	1	10	47	1.45
703933--703993	19	3.2	19	81	9	70	36	0	1	62	1.05
703929--704005	26	3.0	25	75	16	77	38	0	1	59	1.06
703996--704041	19	2.3	20	82	17	60	65	0	0	34	0.93
709672--709699	2	14.0	2	100	0	56	50	0	50	0	1.00
709703--709745	21	2.0	21	81	0	50	13	11	0	74	1.07
711321--711345	5	5.0	5	100	0	50	40	0	0	60	0.97
711280--711384	42	2.3	47	79	15	114	46	0	0	52	1.07
711334--711402	30	2.2	33	85	10	92	46	0	0	53	1.00
711685--711731	2	23.5	2	100	0	94	0	48	0	51	1.00
711731--711761	2	15.5	2	100	0	62	48	0	0	51	1.00
712143--712197	18	3.0	20	84	10	64	34	3	0	61	1.13
712150--712197	24	2.0	25	84	12	64	33	4	0	62	1.14
714038--714082	19	2.4	19	82	17	58	57	0	0	42	0.98
714581--714624	2	23.0	2	90	9	74	52	0	0	47	1.00
719266--719313	25	1.9	25	95	0	87	43	10	0	45	1.38
720823--720852	2	15.0	2	100	0	60	50	0	0	50	1.00
721224--721250	14	1.9	14	100	0	54	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721973--722011	2	19.0	2	89	5	60	51	0	2	46	1.14
721977--722014	19	2.0	19	100	0	76	52	0	5	42	1.24
723118--723192	31	2.4	32	74	14	75	41	1	0	57	1.07
724130--724171	2	21.0	2	90	0	66	45	2	0	52	1.13
726326--726412	45	1.9	45	81	4	104	42	0	1	56	1.07
726437--726495	28	2.1	29	81	9	68	32	3	0	64	1.10
726845--726882	13	3.0	13	84	7	51	34	0	0	65	0.93
727514--727553	17	2.4	17	83	8	55	57	0	0	42	0.98
729601--729625	6	4.2	6	100	0	50	84	0	0	16	0.63
732036--732083	16	3.0	16	75	9	53	35	0	0	64	0.94
732590--732667	28	2.9	27	81	11	88	56	0	2	41	1.13
732622--732664	15	2.8	16	82	10	54	58	0	0	41	0.98
733099--733146	15	2.9	16	82	14	62	50	0	0	50	1.00
733106--733146	9	4.9	9	85	14	61	46	0	0	53	1.00
733100--733146	18	2.9	16	87	9	60	48	0	0	51	1.00
733916--733944	2	14.5	2	100	0	58	48	0	51	0	1.00
735540--735567	2	14.0	2	100	0	56	50	0	0	50	1.00
738766--738817	2	26.0	2	92	0	86	50	0	1	48	1.12
748186--748237	26	2.0	26	100	0	104	34	23	3	38	1.73
748703--748736	2	17.0	2	100	0	68	50	0	0	50	1.00
752789--752828	18	2.3	18	82	4	55	42	0	0	57	0.98
753183--753214	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755561--755607	17	2.7	17	78	21	53	63	2	2	31	1.18
756221--756261	2	20.5	2	100	0	82	48	0	0	51	1.00
756769--756794	2	13.0	2	100	0	52	50	0	0	50	1.00
757476--757502	2	13.5	2	100	0	54	0	0	48	51	1.00
763576--763631	21	2.8	21	71	15	55	57	0	0	42	0.99
763587--763627	20	2.0	20	85	9	55	58	0	0	41	0.98
764588--764613	2	13.0	2	100	0	52	50	0	0	50	1.00
764681--764723	15	2.9	15	100	0	86	53	0	0	46	1.00
764681--764751	30	2.4	30	81	9	76	54	0	1	43	1.08
764783--764817	15	2.2	16	90	10	54	37	0	2	60	1.12
764790--764830	16	2.5	17	84	7	50	39	2	4	53	1.35
765778--765827	2	26.0	2	92	8	86	48	0	0	52	1.00
768305--768340	12	2.9	12	91	4	54	72	0	0	27	0.85
768430--768456	6	4.5	6	100	0	54	18	14	33	33	1.92
770258--770296	18	2.2	18	86	9	53	41	5	7	46	1.55
770259--770303	19	2.3	20	77	11	58	37	4	6	51	1.49
774245--774279	3	11.7	3	100	0	70	34	0	0	65	0.93
774857--774882	2	13.0	2	100	0	52	50	0	0	50	1.00
775105--775134	14	2.2	13	94	5	51	73	0	0	26	0.84
776151--776195	2	22.5	2	100	0	90	51	0	0	48	1.00
776388--776446	2	29.5	2	89	0	91	44	0	5	50	1.24
776686--776710	9	2.8	9	100	0	50	88	0	12	0	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777131--777166	1	36.0	1	100	0	72	0	0	0	100	0.00
787083--787159	11	6.7	12	74	18	74	51	0	0	48	1.00
787080--787140	28	2.1	31	85	14	85	54	0	0	45	1.00
787085--787167	17	4.8	17	72	23	50	51	0	0	48	1.00
787089--787161	28	2.6	28	78	10	78	52	0	0	47	1.00
787118--787204	41	2.0	42	80	10	97	49	1	4	44	1.30
787201--787241	12	3.6	12	77	12	50	63	0	0	36	0.95
787550--787595	2	23.0	2	100	0	92	50	0	0	50	1.00
787971--788033	21	3.0	22	75	13	62	33	0	0	66	0.92
787952--788007	28	2.0	27	86	10	78	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8