genome.fa.s226.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold226
Parameters: 2 7 7 80 10 50 1000
Length:  1170647

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 925 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999379--999412	16	2.1	16	89	10	52	67	2	8	20	1.31
1000423--1000455	2	16.5	2	100	0	66	51	0	0	48	1.00
1000882--1000907	2	13.0	2	100	0	52	50	0	0	50	1.00
1004106--1004180	21	3.5	21	90	3	105	44	0	21	34	1.53
1004124--1004187	21	3.0	21	80	11	60	43	1	18	35	1.60
1009113--1009155	19	2.2	20	88	12	63	37	0	0	62	0.95
1009211--1009257	18	2.7	17	87	12	69	59	0	2	38	1.09
1009213--1009274	18	3.2	20	80	13	67	56	1	1	40	1.19
1009992--1010038	13	3.4	13	81	16	58	36	0	2	61	1.08
1012264--1012302	19	2.1	19	95	0	69	35	20	20	23	1.96
1013419--1013475	2	28.5	2	100	0	114	50	0	0	49	1.00
1013446--1013691	127	1.9	128	86	5	347	44	6	10	38	1.65
1014405--1014446	12	3.3	13	81	12	52	26	0	0	73	0.83
1020644--1020683	2	20.0	2	84	0	53	42	2	5	50	1.37
1025892--1025934	21	2.0	21	100	0	86	39	13	13	32	1.85
1028943--1028987	20	2.1	22	84	8	58	66	4	4	24	1.29
1032738--1032772	16	2.1	16	89	10	52	45	0	0	54	0.99
1036273--1036303	2	15.5	2	100	0	62	48	0	0	51	1.00
1038464--1038630	72	2.3	71	81	3	190	39	17	12	30	1.87
1038503--1038637	72	1.9	72	85	3	191	37	17	14	29	1.90
1038503--1038665	37	4.5	35	74	13	116	38	18	14	28	1.90
1039473--1039554	17	4.9	17	75	11	71	47	0	1	51	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039831--1039856	2	13.0	2	100	0	52	50	0	0	50	1.00
1042584--1042625	22	1.9	22	90	9	68	61	0	0	38	0.96
1044166--1044190	2	12.5	2	100	0	50	48	0	0	52	1.00
1044930--1044998	29	2.3	30	85	5	95	47	13	11	27	1.76
1045092--1045124	2	16.5	2	100	0	66	0	0	48	51	1.00
1051388--1051477	47	1.9	47	97	0	171	40	17	15	26	1.90
1054896--1054921	2	13.0	2	100	0	52	50	0	0	50	1.00
1060246--1060299	20	2.7	20	91	2	81	35	18	9	37	1.83
1063640--1063714	20	3.8	20	83	3	80	45	13	9	32	1.75
1069022--1069051	5	6.0	5	92	0	51	16	0	43	40	1.48
1069734--1069771	19	2.0	19	85	10	51	71	5	0	23	1.07
1070016--1070076	2	30.5	2	100	0	122	50	0	0	49	1.00
1076471--1076542	38	1.9	38	86	8	103	43	0	1	55	1.08
1076524--1076631	34	3.1	34	85	9	121	40	0	2	56	1.14
1076555--1076637	35	2.7	29	74	24	80	40	0	2	56	1.12
1078917--1078950	3	11.3	3	100	0	68	67	0	0	32	0.91
1081373--1081474	27	3.8	26	80	14	102	43	0	0	56	0.99
1081673--1081710	4	9.5	4	88	0	58	2	23	2	71	1.12
1084145--1084179	17	1.9	17	88	11	52	57	0	0	42	0.99
1088853--1088944	47	2.0	47	97	0	175	25	29	9	35	1.88
1099108--1099149	2	21.0	2	100	0	84	50	0	0	50	1.00
1105270--1105301	16	2.0	16	100	0	64	18	12	37	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1117487--1117537	1	51.0	1	84	0	57	90	7	1	0	0.53
1117487--1117537	19	2.7	19	88	8	77	90	7	1	0	0.53
1117489--1117538	25	2.0	25	92	0	82	88	8	4	0	0.64
1119764--1120875	371	3.0	371	98	0	2098	29	16	22	31	1.96
1134982--1135015	11	3.2	10	88	12	50	88	2	8	0	0.62
1134981--1135012	12	2.7	12	90	0	55	90	3	6	0	0.53
1136003--1136117	61	1.9	60	82	5	144	26	27	17	27	1.98
1136020--1136273	138	1.8	142	82	6	331	25	25	16	31	1.96
1136155--1136513	64	5.4	64	76	11	272	26	25	15	32	1.95
1135998--1136463	203	2.3	201	79	6	467	26	25	15	32	1.95
1136202--1136458	138	1.9	140	89	4	405	26	25	14	33	1.95
1136485--1136549	33	1.9	34	84	3	87	27	32	16	23	1.96
1136583--1136790	113	1.8	113	82	6	269	21	19	17	40	1.91
1136583--1136824	113	2.1	113	81	6	267	22	20	16	40	1.91
1137485--1137538	20	2.6	21	85	2	65	42	11	14	31	1.81
1141752--1141790	15	2.6	16	88	12	64	25	53	0	20	1.45
1142372--1142438	19	3.8	18	72	18	61	56	4	5	32	1.43
1142714--1142747	16	2.1	16	94	0	59	41	0	2	55	1.15
1146584--1146638	7	7.9	7	100	0	110	14	29	29	27	1.95
1154606--1164443	15	639.9	15	71	20	4609	40	38	15	5	1.70
1154691--1154727	17	2.2	17	90	4	58	35	45	10	8	1.69
1155036--1155086	26	2.0	26	88	7	77	45	37	11	5	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1154607--1164419	116	85.6	107	70	21	3268	40	38	15	5	1.70
1155704--1155792	16	5.5	17	79	15	82	41	38	16	3	1.65
1154605--1165703	7	1461.0	7	73	20	5392	40	39	13	6	1.70
1154618--1164442	68	141.8	67	70	21	3167	40	38	15	5	1.70
1154615--1163988	37	242.6	39	70	21	2470	40	39	15	5	1.71
1158312--1158366	19	2.8	18	78	13	56	41	40	14	3	1.63
1158350--1158451	26	4.0	26	74	14	88	33	40	17	8	1.81
1158791--1158847	8	6.8	9	77	18	61	43	38	8	8	1.67
1159866--1163838	123	32.8	115	70	22	479	40	39	15	4	1.69
1160759--1160832	26	2.9	26	75	20	68	37	36	18	6	1.78
1154605--1165703	22	487.3	21	73	20	5375	40	39	13	6	1.70
1164335--1164381	23	2.0	24	84	12	62	55	31	12	0	1.38
1165475--1165796	21	15.3	21	76	10	87	35	47	9	8	1.65
1165791--1165859	7	9.9	7	80	12	70	18	46	13	21	1.83
1165794--1165871	14	5.5	14	75	13	70	20	46	12	20	1.83
1165785--1165842	21	2.8	21	84	2	82	20	50	10	18	1.76
1165866--1165905	14	2.8	14	85	14	55	42	35	2	20	1.65
1165901--1165964	14	4.6	14	70	14	53	51	32	3	12	1.55
1165872--1165980	21	5.2	21	75	9	64	46	34	3	14	1.62

Tables:   1   2   3   4   5   6   7   8

The End!