genome.fa.s227.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold227
Parameters: 2 7 7 80 10 50 1000
Length:  617646

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327112--327415	79	3.9	78	79	2	313	28	26	12	32	1.92
327190--327579	209	1.9	208	83	2	505	27	26	12	33	1.92
327347--327464	51	2.3	51	76	5	121	31	27	10	31	1.90
327268--327545	130	2.1	130	81	3	346	28	26	12	33	1.93
326980--327602	288	2.2	288	80	5	661	27	25	12	34	1.92
329857--330230	129	2.9	129	95	2	653	45	10	2	41	1.54
330437--330510	20	3.8	19	72	15	62	17	6	4	71	1.24
330480--330552	29	2.6	27	81	10	83	12	5	6	75	1.17
331028--331068	14	2.9	14	88	0	55	9	14	2	73	1.19
331034--331070	14	2.6	14	91	0	56	10	10	2	75	1.14
331105--331143	17	2.3	17	86	8	53	10	10	2	76	1.10
331153--331230	14	5.3	15	68	24	51	15	14	1	69	1.26
331139--331203	30	2.1	32	86	11	91	15	12	1	70	1.23
331505--331548	19	2.3	19	80	7	54	11	9	4	75	1.19
334751--334821	20	3.5	20	80	0	88	30	12	15	40	1.85
348819--348903	1	85.0	1	76	0	62	85	10	2	1	0.73
348819--348900	36	2.2	36	85	6	112	85	10	2	1	0.75
348821--348904	20	4.4	19	79	13	93	84	11	2	1	0.78
350123--350506	89	4.4	86	82	6	396	28	27	17	26	1.98
350117--350501	117	3.3	117	83	5	440	28	28	17	25	1.97
350174--350505	145	2.2	145	84	5	425	27	28	17	26	1.98
350859--350906	19	2.5	19	96	0	87	22	14	4	58	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358713--359386	79	8.5	79	78	7	512	34	14	24	27	1.94
358761--359374	158	3.9	157	82	4	718	33	13	24	28	1.93
358750--359374	236	2.6	236	83	5	769	34	13	24	27	1.93
362425--362695	42	6.5	41	81	9	307	41	11	26	20	1.86
362686--363584	62	14.6	62	85	3	996	30	18	25	25	1.98
362686--363584	123	7.3	123	83	4	951	30	18	25	25	1.98
368521--368583	31	2.0	31	100	0	126	34	12	26	25	1.92
369749--370332	79	7.4	79	83	2	710	33	13	25	27	1.94
372732--372785	20	2.7	20	94	0	90	40	16	14	27	1.88
372682--372835	70	2.2	70	89	0	236	41	14	16	27	1.87
373634--373680	22	2.1	22	96	0	85	8	14	8	68	1.39
375264--375298	14	2.5	14	95	0	61	74	17	0	8	1.06
379477--379750	130	2.1	131	94	1	489	35	12	24	27	1.92
379807--380011	107	1.9	108	85	1	286	31	15	25	26	1.96
379895--380068	79	2.2	78	79	6	197	32	16	24	27	1.96
382362--382455	20	4.7	20	88	5	120	42	13	15	27	1.85
383079--383103	13	1.9	13	100	0	50	36	16	16	32	1.90
383059--383124	32	2.0	33	94	2	116	34	12	16	36	1.86
383165--383189	13	1.9	13	100	0	50	32	16	16	36	1.90
383198--383326	52	2.5	52	92	0	213	35	16	17	30	1.92
387615--387689	20	3.8	20	80	3	80	40	12	13	34	1.81
387612--387689	40	2.0	39	87	2	111	39	12	12	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388225--389419	32	39.0	32	92	3	1471	17	17	34	30	1.94
390654--390689	18	2.0	18	88	0	54	2	0	8	88	0.59
392923--392955	16	2.0	17	88	5	50	24	33	33	9	1.87
404697--404771	20	3.8	20	80	3	80	40	12	13	34	1.81
404694--404771	40	2.0	39	87	2	111	39	12	12	34	1.82
415420--415544	52	2.4	52	94	0	214	28	17	17	36	1.93
415420--415564	52	2.8	52	88	4	186	31	17	17	34	1.93
415550--415575	13	2.0	13	100	0	52	38	15	15	30	1.88
415620--415684	33	2.0	33	87	0	94	40	13	12	33	1.82
415640--415664	13	1.9	13	100	0	50	32	16	16	36	1.90
415963--416072	52	2.1	52	93	0	184	30	16	18	35	1.93
415973--416092	52	2.3	52	88	2	170	31	15	19	33	1.93
416081--416105	13	1.9	13	100	0	50	36	16	16	32	1.90
416167--416191	13	1.9	13	100	0	50	32	16	16	36	1.90
416146--416211	32	2.0	33	94	2	116	36	16	12	34	1.86
417046--417186	52	2.7	55	88	6	195	34	18	23	23	1.96
417025--417549	43	11.1	49	78	11	495	31	17	25	25	1.97
417091--417554	92	5.0	92	89	1	649	30	17	25	25	1.97
417542--418083	65	8.5	65	89	6	790	19	18	33	28	1.96
417542--418083	160	3.4	161	93	3	900	19	18	33	28	1.96
417542--418083	192	2.8	188	91	5	840	19	18	33	28	1.96
418105--418247	34	4.7	27	75	16	97	27	16	34	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418125--418253	34	4.0	32	76	13	115	31	13	34	20	1.92
418159--418218	28	2.1	28	90	0	93	30	15	33	21	1.94
418064--418245	62	2.9	61	81	7	190	29	15	34	20	1.93
419190--419250	28	2.2	27	82	11	70	0	16	4	78	0.91
419191--419245	21	2.6	21	82	0	74	0	18	1	80	0.81
419212--419250	14	2.8	14	81	14	53	0	10	5	84	0.76
419513--419553	9	4.9	9	82	11	52	0	2	9	87	0.62
419514--419552	8	4.9	8	87	12	62	0	2	10	87	0.65
426411--426539	52	2.5	52	97	0	240	28	17	18	34	1.94
426604--426665	33	1.9	33	90	3	99	38	16	9	35	1.81
435023--435053	15	2.1	15	100	0	62	6	41	6	45	1.55
437004--437155	28	5.3	28	86	5	182	36	28	16	19	1.93
437185--437799	48	12.8	49	82	7	679	23	25	19	32	1.97
437185--437706	97	5.3	98	88	3	701	23	24	19	32	1.98
437630--437790	85	1.9	86	92	1	270	22	25	19	31	1.98
438313--438340	14	2.0	14	100	0	56	14	42	7	35	1.73
438557--438581	13	1.9	13	100	0	50	36	16	16	32	1.90
438537--438602	32	2.0	33	94	2	116	37	12	15	34	1.84
438643--438667	13	1.9	13	100	0	50	32	16	16	36	1.90
438676--438804	52	2.5	52	89	0	213	36	17	16	29	1.92
454754--454805	20	2.7	20	88	8	72	30	11	19	38	1.87
454847--454899	20	2.6	21	84	3	72	28	16	15	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454887--454911	13	1.9	13	100	0	50	36	16	16	32	1.90
454901--454961	20	3.0	20	72	9	52	27	11	19	40	1.86
455468--455512	22	2.0	22	91	8	74	35	28	0	35	1.58
456887--456930	20	2.1	22	87	8	65	4	29	47	18	1.68
457372--457409	13	2.9	13	96	0	67	34	18	15	31	1.92
463543--463594	20	2.7	20	88	8	72	30	11	19	38	1.87
463636--463688	20	2.6	21	84	3	72	28	16	15	39	1.89
463676--463700	13	1.9	13	100	0	50	36	16	16	32	1.90
463710--463750	20	2.0	20	90	0	64	29	12	19	39	1.88
464786--465674	28	31.7	28	82	3	977	30	27	17	24	1.97
465621--465698	32	2.5	32	81	6	90	30	29	16	23	1.96
466670--466742	20	3.7	20	75	0	74	34	12	13	39	1.82
466620--466789	91	1.9	90	91	1	277	31	15	10	42	1.81
472922--472949	13	2.2	13	100	0	56	39	17	14	28	1.89
472904--473141	32	7.4	33	79	10	102	32	18	15	34	1.92
472993--473158	32	5.2	32	93	0	271	33	19	12	34	1.90
473833--474708	49	17.8	49	82	7	945	32	17	25	23	1.97
473833--474708	101	8.9	100	86	6	1019	32	17	25	23	1.97
474782--474833	27	1.9	27	100	0	104	26	15	36	21	1.93
474740--475124	64	5.9	63	73	17	154	34	13	31	21	1.91
474801--475362	34	16.7	34	80	8	424	36	12	30	20	1.90
474808--475461	166	3.9	165	77	11	631	35	12	29	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474776--475428	34	19.8	33	78	11	415	35	12	30	21	1.91
475338--475521	62	3.0	60	81	7	210	30	15	29	23	1.96
474775--475429	200	3.3	198	79	12	634	35	12	30	21	1.91
475347--475527	31	5.9	32	78	7	162	30	16	29	24	1.96
476825--476876	15	3.3	15	84	13	52	3	3	13	78	1.02
483340--483394	20	2.8	20	91	0	92	38	12	14	34	1.84
483430--483457	13	2.2	13	100	0	56	39	17	14	28	1.89
483412--483475	33	1.9	33	87	6	94	39	12	17	31	1.87
483501--483552	13	3.5	13	73	26	50	34	17	13	34	1.89
483509--483591	19	4.7	19	77	17	97	34	20	12	32	1.89

Tables:   1   2   3   4   5