genome.fa.s227.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold227
Parameters: 2 7 7 80 10 50 1000
Length:  617646

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 505 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483501--483571	32	2.2	32	94	0	124	33	19	12	33	1.90
484303--484362	27	2.1	30	81	9	72	13	5	8	73	1.23
484387--484443	25	2.2	26	78	9	64	10	15	1	71	1.21
484401--484450	25	2.0	25	84	11	66	14	14	2	70	1.27
490233--490274	22	1.9	22	90	9	68	54	0	9	35	1.33
493157--493214	26	2.2	26	100	0	116	18	6	27	46	1.75
493726--493976	128	1.9	130	90	3	400	46	10	3	39	1.57
493980--494031	7	7.0	7	79	12	59	17	3	0	78	0.89
493980--494075	24	4.0	24	72	14	81	15	6	2	76	1.09
493978--494048	31	2.3	31	80	11	83	16	4	1	77	1.00
494024--494064	17	2.3	18	83	8	57	12	7	2	78	1.06
494214--494281	18	3.9	17	78	14	59	13	4	4	77	1.06
494234--494285	6	8.8	6	77	10	54	13	3	1	80	0.93
494405--494476	21	3.2	21	70	21	56	15	5	2	76	1.09
494692--494746	16	3.5	15	78	9	65	12	0	7	80	0.91
494696--494737	21	2.0	21	85	0	57	9	0	9	80	0.89
494709--494756	21	2.3	21	82	7	53	10	4	6	79	1.05
494933--494972	14	2.9	14	88	3	55	12	10	0	77	0.99
500972--501030	6	10.0	6	77	17	52	1	18	30	49	1.58
500990--501022	16	2.0	17	88	5	50	3	15	36	45	1.61
501215--501260	22	2.1	22	83	0	56	10	10	34	43	1.75
501732--501862	57	2.4	56	88	6	187	17	16	11	54	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503484--503675	51	3.8	52	69	7	133	22	18	22	35	1.95
511114--511227	50	2.3	50	92	0	192	45	10	14	28	1.79
511952--512211	142	1.8	142	79	4	301	39	10	26	24	1.86
512186--512274	16	5.6	16	77	5	72	42	8	25	22	1.83
512321--512350	10	3.0	10	95	0	51	40	16	23	20	1.91
513582--513630	22	2.2	23	85	10	66	4	6	6	83	0.90
513575--513636	28	2.2	28	83	13	83	6	6	8	79	1.07
513576--513650	30	2.6	30	81	8	84	5	6	10	77	1.12
513595--513635	22	1.9	21	85	5	55	4	4	2	87	0.72
513580--513649	29	2.4	27	75	13	68	5	7	10	77	1.13
519654--519856	77	2.6	78	84	4	241	29	15	29	25	1.96
519808--519879	28	2.6	27	86	8	92	25	18	33	23	1.97
519867--520037	52	3.3	51	79	5	191	32	12	25	28	1.93
519810--520206	212	1.9	212	86	4	577	31	12	26	28	1.93
520022--520095	27	2.7	28	87	6	98	22	18	32	25	1.97
522568--522593	13	2.0	13	100	0	52	38	15	15	30	1.88
522547--522613	33	2.0	33	88	0	98	43	16	14	25	1.86
522633--522700	19	3.9	18	76	23	83	38	14	11	35	1.83
522655--522679	13	1.9	13	100	0	50	32	16	16	36	1.90
522636--522698	32	2.0	32	96	0	117	36	15	12	34	1.86
523664--523751	26	3.3	26	66	20	72	20	17	35	27	1.94
523506--524272	55	13.4	58	87	5	863	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523505--524266	284	2.7	285	89	4	1119	24	20	28	26	1.99
525237--525297	8	7.6	8	85	12	65	0	0	13	86	0.56
525238--525304	13	4.8	13	79	13	62	0	1	13	85	0.68
525231--525290	1	60.0	1	76	0	57	0	1	10	88	0.59
537594--537670	28	2.8	28	83	0	91	25	19	31	23	1.98
537655--537823	52	3.3	49	79	11	169	31	12	26	30	1.93
537806--537881	27	2.8	28	86	6	102	22	19	32	25	1.97
537597--537992	212	1.9	212	87	3	582	31	12	27	28	1.93
540357--540382	13	2.0	13	100	0	52	38	15	15	30	1.88
540336--540402	33	2.0	33	88	0	98	43	16	14	25	1.86
540422--540489	19	3.9	18	76	23	83	38	14	11	35	1.83
540444--540468	13	1.9	13	100	0	50	32	16	16	36	1.90
540425--540487	32	2.0	32	96	0	117	36	15	12	34	1.86
549440--549496	5	12.2	5	85	9	68	84	14	1	0	0.71
549440--549504	10	6.9	9	84	11	78	84	13	1	0	0.69
549742--549813	8	8.6	8	76	8	54	81	6	11	0	0.85
549742--549783	14	3.0	14	80	19	52	85	4	9	0	0.72
549755--549805	26	2.0	26	88	0	75	82	7	9	0	0.85
549742--549802	34	1.9	32	87	12	90	83	8	8	0	0.81
550848--550893	23	2.0	23	95	0	83	28	32	21	17	1.96
550871--551305	31	13.0	35	77	11	380	19	33	12	34	1.89
550871--551380	65	7.7	65	74	11	362	20	33	12	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550873--551380	100	5.1	100	88	4	708	20	33	12	33	1.90
550871--551361	134	3.7	132	76	13	351	19	33	12	33	1.90
551365--551469	33	3.2	32	83	9	142	29	31	15	23	1.95
551485--551552	21	3.2	21	65	19	59	26	26	16	30	1.96
551467--552346	92	9.5	92	93	1	1463	25	25	17	31	1.97
553181--553278	32	3.0	32	95	1	169	34	11	17	36	1.85
553179--553276	19	5.8	18	71	28	90	33	11	17	37	1.85
553201--553257	13	3.9	13	74	24	51	35	12	17	35	1.87
553319--553377	13	5.0	13	71	23	58	30	16	13	38	1.88
553365--553493	52	2.5	52	96	0	240	34	17	18	28	1.94
556557--556594	17	2.2	17	86	13	51	76	13	5	5	1.13
559638--559663	13	2.0	13	100	0	52	38	15	15	30	1.88
561877--561926	21	2.3	21	80	10	57	56	4	18	22	1.58
563724--563754	15	2.1	15	93	0	53	48	16	22	12	1.80
565767--565844	20	3.7	20	74	15	75	28	14	15	42	1.85
565965--566010	21	2.2	20	81	11	58	32	19	4	43	1.71
568802--568865	13	4.6	14	84	15	73	84	9	6	0	0.78
569846--570530	55	12.3	55	87	4	932	28	29	21	21	1.98
569846--570507	276	2.4	277	90	2	1035	28	29	21	20	1.98
570395--570484	26	3.3	26	66	19	67	27	33	18	20	1.96
571333--571400	19	3.9	19	78	21	85	35	11	14	38	1.83
571335--571397	32	2.0	32	96	0	117	34	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571354--571378	13	1.9	13	100	0	50	36	16	16	32	1.90
571440--571465	13	2.0	13	100	0	52	30	15	15	38	1.88
571420--571486	33	2.0	33	88	0	98	25	14	16	43	1.86
573934--574006	27	2.7	27	87	6	94	23	34	21	20	1.97
573989--574159	51	3.3	51	79	4	198	29	26	11	32	1.92
574142--574223	28	2.9	28	82	7	96	24	31	17	26	1.97
578531--578578	21	2.3	22	78	10	64	37	18	6	37	1.76
579376--579406	16	1.9	16	93	0	53	22	0	6	70	1.09
580085--580418	120	3.0	105	74	18	284	55	1	1	41	1.18
580259--580418	53	3.0	52	67	11	126	56	2	1	39	1.24
580307--580374	31	2.2	32	82	12	79	57	0	0	42	0.98
580390--580448	23	2.5	24	83	8	77	62	5	3	28	1.32
580237--580442	107	1.9	107	82	7	258	55	2	2	39	1.26
580704--581060	121	2.9	124	83	10	434	43	2	1	51	1.25
581012--581066	26	2.1	26	80	6	67	45	0	1	52	1.11
581020--581077	26	2.3	26	82	8	66	48	0	1	50	1.11
581492--581538	18	2.6	18	89	0	76	27	17	17	38	1.91
581598--581634	11	3.4	11	84	0	56	37	0	0	62	0.96
583231--583256	13	2.0	13	100	0	52	30	15	15	38	1.88
583295--583370	21	3.7	21	76	3	91	28	15	11	43	1.83
583316--583388	20	3.6	20	79	3	92	31	17	13	36	1.89
583295--583388	41	2.3	41	96	0	170	29	17	12	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585817--585854	13	2.9	13	96	0	67	31	15	18	34	1.92
587934--587964	15	2.1	15	93	0	53	12	22	16	48	1.80
589767--589811	21	2.1	21	84	8	56	22	20	4	53	1.63
591950--591975	13	2.0	13	100	0	52	30	15	15	38	1.88
592014--592089	21	3.7	21	80	3	100	28	17	11	42	1.84
592035--592107	20	3.6	20	81	3	101	31	19	13	35	1.91
592014--592107	41	2.3	41	98	0	179	29	18	12	39	1.88
593762--594327	281	2.0	284	90	1	904	27	20	13	38	1.91
594688--594767	31	2.7	29	76	16	83	53	1	1	43	1.16
594733--595100	124	3.0	123	82	8	444	54	1	2	41	1.23

Tables:   1   2   3   4   5