genome.fa.s231.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold231
Parameters: 2 7 7 80 10 50 1000
Length:  1009718

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 735 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324974--325002	4	7.2	4	100	0	58	75	0	0	24	0.80
325243--325273	2	15.5	2	100	0	62	48	0	0	51	1.00
340026--340053	3	9.3	3	100	0	56	67	0	0	32	0.91
340161--340202	23	1.9	22	85	9	59	40	4	7	47	1.52
342774--342809	18	1.9	19	88	5	56	47	0	0	52	1.00
342769--342888	28	4.6	28	71	19	75	46	0	0	51	1.12
342851--342902	17	3.1	17	81	13	63	44	0	0	55	0.99
342896--342929	15	2.2	16	94	5	61	64	0	0	35	0.94
344200--344255	17	3.3	16	80	14	60	58	3	0	37	1.15
344200--344307	15	6.2	17	69	21	57	62	2	0	35	1.10
344211--344340	31	4.0	31	76	15	104	63	3	0	32	1.12
344905--344949	23	2.0	22	82	4	54	33	6	2	57	1.37
345526--345572	24	2.0	24	82	0	58	46	4	6	42	1.48
345853--345897	23	1.9	24	81	4	56	53	2	4	40	1.33
352588--352612	13	1.9	13	100	0	50	12	0	8	80	0.92
353604--353676	16	4.4	16	70	20	51	75	0	1	23	0.88
358549--359034	216	2.2	219	93	1	825	36	16	7	39	1.76
360170--360203	2	18.0	2	88	11	54	50	0	0	50	1.00
360147--360203	26	2.2	26	84	12	73	43	5	0	50	1.24
360259--360289	9	3.4	9	95	0	53	22	3	22	51	1.62
360295--360359	15	4.1	16	79	11	71	73	0	0	26	0.83
360297--360356	27	2.3	27	82	5	79	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361157--361189	17	1.9	17	93	0	57	78	0	0	21	0.75
362640--362704	14	4.7	14	79	11	62	60	4	3	32	1.33
362633--362705	14	5.3	14	77	9	60	60	4	2	32	1.30
364236--364269	2	17.0	2	100	0	68	50	0	0	50	1.00
366809--366851	17	2.4	17	81	18	52	39	0	2	58	1.11
366786--366853	28	2.5	27	75	11	68	35	1	1	61	1.14
373261--373312	26	2.0	27	84	3	70	65	1	3	28	1.21
375201--375728	263	2.0	263	98	0	1020	45	5	9	40	1.59
376870--376898	2	14.5	2	100	0	58	0	48	0	51	1.00
381036--381081	23	2.0	23	100	0	92	30	17	26	26	1.97
384427--384493	16	4.4	15	78	9	73	44	2	2	49	1.32
384510--384548	20	2.0	20	90	5	62	43	0	0	56	0.99
384514--384584	26	2.8	25	78	6	72	38	2	0	59	1.12
388505--388669	80	2.1	80	80	10	178	40	3	4	52	1.36
389946--389989	10	4.6	10	83	11	65	59	2	0	38	1.10
390546--390585	17	2.3	18	86	4	64	47	0	0	52	1.00
395286--395311	12	2.2	12	100	0	52	50	19	7	23	1.73
401437--401468	15	2.2	15	94	5	57	6	18	0	75	1.01
401855--401888	12	3.0	12	87	12	54	70	0	0	29	0.87
403749--403776	2	14.0	2	100	0	56	50	0	0	50	1.00
411390--411430	18	2.3	18	100	0	82	56	17	9	17	1.67
414755--414800	20	2.3	20	96	0	83	45	21	13	19	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415527--415639	41	2.8	40	87	4	156	38	11	10	39	1.76
415509--415646	40	3.4	40	78	6	143	39	14	10	36	1.80
416502--416540	19	2.2	16	86	13	51	35	0	2	61	1.10
418007--418159	77	2.0	78	93	1	263	39	3	22	34	1.72
418800--419463	276	2.4	273	78	8	672	38	11	16	33	1.84
434895--434949	2	27.5	2	96	0	101	50	1	0	47	1.11
440598--440628	2	15.5	2	93	0	53	3	0	45	51	1.17
446215--446248	14	2.3	15	95	5	61	2	26	0	70	1.01
446648--446709	28	2.2	27	80	8	70	25	3	0	70	1.02
446862--446901	20	2.0	21	85	5	55	27	0	0	72	0.85
447535--447590	29	1.9	30	82	13	73	64	1	3	30	1.21
447567--447641	28	2.8	28	78	15	86	54	0	0	45	0.99
447651--447703	17	3.0	17	76	15	54	50	0	0	49	1.00
447789--447875	25	3.5	26	73	20	80	42	1	0	56	1.07
448122--448184	6	10.8	6	80	13	69	38	3	0	58	1.14
448238--448320	23	3.5	24	76	19	86	55	0	0	44	0.99
448236--448333	27	3.8	25	73	20	78	54	0	0	45	1.00
448390--448431	23	1.9	22	85	9	59	47	2	0	50	1.14
448952--449023	36	2.0	36	100	0	144	19	22	30	27	1.98
448961--449037	36	2.1	36	85	4	102	22	25	29	22	1.99
449093--449202	55	2.0	55	96	0	202	36	22	31	9	1.86
450211--450461	123	2.0	123	98	0	484	27	19	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451618--451677	11	5.2	12	84	10	72	53	1	1	43	1.20
451610--451665	11	5.1	11	79	20	64	53	1	1	42	1.21
451615--451688	11	7.0	10	76	18	62	55	2	1	40	1.22
451609--451691	21	3.9	21	78	12	80	53	2	3	40	1.32
452999--453074	20	3.8	20	76	0	80	35	11	11	40	1.79
452999--453077	40	2.0	39	85	2	104	35	11	12	40	1.79
459330--459364	13	2.7	13	95	0	61	37	22	8	31	1.85
461917--461975	15	3.9	15	82	10	68	69	3	1	25	1.13
461917--461956	3	13.7	3	89	5	64	70	2	0	27	1.01
462411--462448	19	2.0	20	84	5	51	60	7	0	31	1.25
464209--464252	23	2.0	22	81	4	52	50	0	0	50	1.00
468753--468835	29	2.8	31	72	17	79	56	0	6	37	1.24
469373--469413	17	2.3	18	91	4	66	0	19	2	78	0.87
469433--469462	3	10.0	3	100	0	60	66	0	0	33	0.92
469902--469936	14	2.5	14	90	0	61	60	0	0	40	0.97
470574--470630	30	1.9	30	96	0	105	21	8	7	63	1.47
472546--472579	17	2.0	17	88	0	50	76	2	11	8	1.12
472668--472698	13	2.4	13	100	0	62	32	6	41	19	1.77
472764--472817	26	2.2	24	83	6	63	44	18	3	33	1.67
476620--476644	2	12.5	2	100	0	50	48	0	0	52	1.00
478080--478151	31	2.3	31	95	0	126	36	4	8	51	1.51
478083--478159	15	4.9	16	74	6	77	36	3	7	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478715--478771	22	2.6	21	84	13	71	52	0	1	45	1.11
485385--485413	14	2.0	15	93	6	51	55	0	0	44	0.99
486396--486432	3	12.3	3	100	0	74	64	0	0	35	0.94
486605--486648	2	22.0	2	95	0	79	50	0	2	47	1.13
486695--486721	2	13.5	2	100	0	54	51	0	0	48	1.00
489893--489925	2	17.0	2	93	6	59	48	0	0	51	1.00
497811--497859	15	3.1	15	73	21	55	40	4	0	55	1.19
498635--498665	14	2.2	14	100	0	62	29	0	0	70	0.87
499907--499942	2	18.0	2	88	0	54	50	0	0	50	1.00
502172--502216	18	2.5	18	92	0	72	24	15	4	55	1.59
505144--505205	31	2.0	31	84	9	83	54	0	0	45	0.99
505320--505371	21	2.5	21	87	0	68	34	1	0	63	1.06
505293--505357	27	2.3	30	81	7	82	33	0	0	66	0.92
507780--507877	46	2.1	46	88	0	142	34	19	24	21	1.96
508055--508121	17	4.2	15	75	17	55	43	0	0	56	0.99
508026--508155	45	2.8	45	81	12	140	41	0	0	58	0.98
508015--508147	50	2.7	52	77	13	147	43	0	0	56	0.99
508021--508168	28	5.2	29	68	20	89	41	0	0	58	0.98
508026--508130	48	2.3	46	85	8	133	42	0	0	57	0.99
508071--508146	33	2.3	32	78	17	86	44	0	0	55	0.99
508138--508193	14	4.5	13	79	14	57	41	0	0	58	0.98
508149--508198	15	3.6	14	81	10	59	42	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508384--508436	20	2.7	20	82	11	65	45	0	0	54	0.99
508473--508535	24	2.7	23	87	5	90	68	3	0	28	1.05
508482--508565	34	2.6	31	78	10	98	72	1	0	26	0.92
509530--509568	2	19.5	2	100	0	78	51	0	0	48	1.00
510220--510259	16	2.5	16	83	0	53	37	10	0	52	1.35
511393--511418	13	2.0	13	100	0	52	30	30	7	30	1.85
511984--512125	27	5.2	27	69	22	93	42	0	0	57	0.99
511984--512133	64	2.5	60	76	19	141	43	0	0	56	0.99
512085--512145	26	2.3	25	86	13	79	40	0	1	57	1.08
518967--519335	154	2.4	152	76	6	361	26	14	18	40	1.88

Tables:   1   2   3   4   5   6   7