genome.fa.s231.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold231
Parameters: 2 7 7 80 10 50 1000
Length:  1009718

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 735 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
859340--859453	8	13.2	9	70	16	64	61	0	0	38	0.96
859316--859393	27	3.0	27	79	18	71	65	1	0	33	1.01
859378--859453	34	2.2	36	88	6	113	60	0	0	39	0.97
859337--859461	27	4.1	30	74	20	102	59	0	0	40	0.98
859455--859480	6	4.3	6	100	0	52	34	0	0	65	0.93
860187--860217	15	2.1	15	100	0	62	74	0	0	25	0.82
860548--860572	13	1.9	13	100	0	50	36	0	0	64	0.94
860929--860998	17	4.2	17	73	18	58	55	1	0	42	1.08
860943--861009	24	3.0	24	76	10	70	59	2	0	37	1.13
861233--861272	2	20.0	2	94	0	71	50	2	0	47	1.14
861579--861627	14	3.4	14	78	13	55	61	0	0	38	0.96
861590--861637	24	2.0	24	88	8	71	58	0	2	39	1.10
861904--861938	3	11.7	3	93	0	61	34	2	0	62	1.10
862241--862272	5	6.4	5	100	0	64	81	0	0	18	0.70
862992--863018	4	6.8	4	100	0	54	25	0	0	74	0.83
864091--864126	11	3.3	11	88	0	54	13	2	0	83	0.76
864607--864640	10	3.4	10	87	0	50	61	5	2	29	1.34
865617--865659	2	21.5	2	95	0	77	48	2	0	48	1.14
867196--867252	20	2.7	21	70	10	53	47	8	3	40	1.52
868186--868212	12	2.2	12	100	0	54	33	0	11	55	1.35
868709--868761	25	2.1	25	83	13	65	69	1	1	26	1.09
868752--868821	31	2.3	31	85	14	92	54	1	0	44	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870282--870308	2	13.5	2	100	0	54	48	0	0	51	1.00
870796--870873	35	2.2	37	83	4	106	43	6	2	47	1.42
876093--876138	23	2.0	23	91	0	74	34	10	23	30	1.89
876163--876221	10	6.1	9	77	13	55	67	0	0	32	0.91
876179--876268	20	4.9	19	76	15	75	60	0	0	40	0.97
876158--876271	19	6.3	20	71	19	90	59	0	0	40	0.97
876192--876259	18	3.9	18	75	16	63	57	0	0	42	0.98
876193--876268	32	2.3	33	86	4	100	57	0	0	42	0.98
876199--876283	27	3.3	26	73	20	88	55	1	0	43	1.07
876192--876289	52	1.9	51	87	6	144	58	1	0	40	1.05
877114--877295	34	5.4	34	89	0	260	25	7	26	40	1.82
877598--877660	19	3.3	19	90	0	90	28	17	19	34	1.94
881726--881909	34	5.5	34	90	0	273	25	8	26	39	1.84
882930--883019	45	2.0	45	97	0	171	27	28	10	33	1.89
883455--883646	99	1.9	98	90	1	303	22	19	16	41	1.90
886397--886439	16	2.6	16	85	3	50	74	0	13	11	1.07
888148--888174	14	1.9	14	100	0	54	29	14	22	33	1.94
889967--890014	20	2.4	20	85	0	60	45	0	0	54	0.99
898894--898944	16	3.3	16	75	24	56	60	7	0	31	1.25
899848--899903	30	1.9	29	82	13	71	28	10	5	55	1.56
900691--900757	24	2.6	27	79	13	79	61	0	0	38	0.96
900773--900803	15	2.0	16	93	6	55	64	6	3	25	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900795--900899	28	3.6	29	75	15	92	53	1	1	42	1.23
901163--901195	2	17.0	2	93	6	59	48	0	0	51	1.00
901291--901318	14	2.0	14	100	0	56	57	0	0	42	0.99
902101--902136	18	2.0	18	88	0	54	66	0	0	33	0.92
902129--902153	13	1.9	13	100	0	50	64	0	0	36	0.94
902218--902288	29	2.5	27	77	18	65	50	0	1	47	1.09
902829--902869	12	3.1	14	82	13	59	41	0	0	58	0.98
904561--904602	18	2.3	18	80	16	50	33	0	0	66	0.92
904571--904604	17	1.9	17	94	5	59	35	0	0	64	0.94
906445--906488	2	22.0	2	100	0	88	50	0	50	0	1.00
911882--911982	49	2.0	50	98	1	195	27	17	21	32	1.96
913093--913165	33	2.2	33	95	2	128	24	23	16	35	1.95
913672--913765	47	2.0	47	87	4	136	50	7	7	35	1.59
914357--914398	22	1.9	22	90	9	68	38	0	0	61	0.96
914897--914928	16	2.1	16	94	5	57	68	0	0	31	0.90
915736--915798	28	2.3	28	82	17	87	33	11	11	44	1.75
915736--915808	28	2.6	29	76	21	84	34	9	12	43	1.75
916360--916401	20	2.1	20	86	8	59	52	4	0	42	1.22
917172--917217	2	23.0	2	90	0	74	45	0	0	54	0.99
917493--917532	21	1.9	21	89	0	62	35	2	0	62	1.09
917866--917901	10	4.0	9	86	13	56	77	0	0	22	0.76
919973--920006	11	2.9	12	86	8	52	35	0	2	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
922657--922686	4	7.8	4	92	7	53	23	0	0	76	0.78
923804--923908	27	4.0	26	70	15	74	48	0	0	50	1.07
923787--923847	31	1.9	32	84	15	83	44	1	0	54	1.10
923826--923864	19	2.0	20	85	5	53	38	2	0	58	1.12
925168--925255	3	29.3	3	92	0	149	30	1	2	65	1.12
925594--925627	7	4.9	7	100	0	68	73	11	14	0	1.10
928881--928935	14	3.6	14	75	15	56	27	3	3	65	1.26
928883--928935	17	3.3	17	69	30	53	26	3	3	66	1.26
928881--928936	15	3.7	15	75	13	60	26	3	3	66	1.25
934074--934132	29	2.2	25	80	14	64	42	1	0	55	1.09
935568--935602	17	2.0	17	88	5	52	62	5	0	31	1.18
936250--936295	17	2.9	15	81	9	56	47	0	0	52	1.00
939215--939266	16	3.1	17	80	8	52	34	0	3	61	1.14
940570--940625	24	2.3	25	93	6	105	14	10	7	67	1.40
941418--941464	23	2.0	23	95	0	85	38	19	6	36	1.77
943502--943556	23	2.4	23	93	0	92	34	12	27	25	1.92
948377--948401	4	6.2	4	100	0	50	24	0	0	76	0.80
950415--950452	18	2.1	18	95	0	67	7	10	2	78	1.04
953375--953403	2	14.5	2	100	0	58	0	51	0	48	1.00
955773--955824	25	2.0	27	85	7	72	48	3	0	48	1.20
956105--956184	17	4.8	17	77	11	60	40	8	8	42	1.67
956103--956218	34	3.4	34	81	2	126	39	9	11	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956261--956293	17	1.9	17	88	11	50	39	3	6	51	1.42
956774--956813	15	2.9	14	89	10	64	60	0	0	40	0.97
962229--962272	22	2.0	23	86	4	63	70	0	0	29	0.88
962224--962281	18	3.3	18	83	7	66	63	0	0	36	0.94
962682--962724	2	21.5	2	100	0	86	0	48	0	51	1.00
963159--963215	28	2.1	27	83	9	71	36	5	1	56	1.32
964681--964731	2	25.5	2	100	0	102	50	0	0	49	1.00
966551--966887	166	2.0	164	96	2	622	49	8	8	33	1.63
967594--967627	17	1.9	17	88	5	50	52	0	0	47	1.00
967572--967620	23	2.1	23	84	0	62	42	0	0	57	0.99
967601--967659	16	3.6	17	75	6	50	61	0	1	37	1.07
968200--968234	2	17.5	2	93	0	61	48	2	0	48	1.16
968880--969027	79	1.9	78	91	4	246	50	6	8	35	1.57
969951--969997	21	2.2	21	85	7	60	42	4	2	51	1.33
970041--970094	20	2.7	20	85	0	63	35	3	7	53	1.47
970244--970308	21	3.2	19	74	12	51	33	4	6	55	1.45
970257--970313	19	2.9	19	86	5	69	36	5	7	50	1.52
970358--970433	24	3.4	22	82	12	91	39	5	7	47	1.55
970339--970438	21	4.6	21	80	9	103	40	5	7	48	1.52
970399--970731	21	16.1	21	70	11	118	39	4	6	50	1.47
970615--970738	10	12.6	9	67	20	61	43	3	0	52	1.23
970662--970734	11	5.9	12	77	19	71	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970654--970754	10	9.6	11	71	22	76	44	0	0	55	0.99
970654--970738	40	2.1	39	93	4	143	42	0	0	57	0.98
970656--970751	24	4.5	22	77	18	87	45	0	0	54	0.99
973790--973832	2	21.5	2	100	0	86	48	0	0	51	1.00
974223--974256	17	2.0	17	88	0	50	47	0	0	52	1.00
978491--978520	2	15.0	2	92	0	51	53	0	0	46	1.00
979097--979137	20	2.0	21	85	4	57	43	4	7	43	1.53
982802--982869	26	2.7	26	73	8	68	55	1	0	42	1.08
983210--983242	13	2.6	13	90	4	50	30	0	0	69	0.88
992473--992527	28	2.0	28	96	0	101	34	23	3	38	1.73

Tables:   1   2   3   4   5   6   7