genome.fa.s246.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold246
Parameters: 2 7 7 80 10 50 1000
Length:  1425817

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 935 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598291--598350	15	4.0	16	78	21	60	66	0	0	33	0.92
598296--598354	22	2.7	23	79	10	70	69	0	0	30	0.89
598584--598645	30	2.0	31	84	9	83	35	0	0	64	0.94
598648--598738	23	4.0	21	67	28	53	43	0	0	56	0.99
598693--598746	15	3.7	15	82	9	58	42	0	0	57	0.98
598656--598738	26	3.4	25	73	25	70	42	0	0	57	0.98
601326--601364	17	2.4	16	87	8	53	23	0	0	76	0.78
604702--604739	2	19.0	2	88	0	58	50	0	0	50	1.00
605140--605188	22	2.1	24	85	7	66	40	0	2	57	1.10
605185--605243	14	3.9	14	74	12	55	42	0	5	52	1.23
605585--605640	27	2.1	27	82	0	67	33	21	7	37	1.81
606493--606522	15	1.9	16	93	6	53	66	0	0	33	0.92
606498--606552	7	7.7	7	77	18	60	67	0	1	30	1.01
606493--606542	16	3.1	17	86	11	61	64	0	2	34	1.05
606498--606544	23	2.1	22	84	11	60	68	0	2	29	1.02
606884--606945	21	2.9	23	73	26	55	40	0	0	59	0.97
606765--606943	60	3.0	61	75	18	162	40	0	1	57	1.13
606833--606945	29	3.9	29	71	22	78	43	0	0	55	1.05
613039--613098	29	2.1	29	83	0	75	50	0	0	50	1.00
615712--615742	16	2.0	15	93	6	53	58	0	0	41	0.98
619245--619291	23	2.0	24	83	4	60	55	0	0	44	0.99
619998--620046	26	1.9	25	84	12	64	40	0	2	57	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620439--620493	29	1.9	28	85	10	76	47	3	0	49	1.19
620472--620507	13	2.8	13	86	0	54	52	5	0	41	1.24
628261--628307	19	2.4	20	82	3	60	42	2	2	53	1.25
628528--628553	7	3.7	7	100	0	52	73	15	11	0	1.11
628686--628726	20	2.0	20	85	4	55	46	0	2	51	1.14
629050--629090	20	2.1	19	90	4	64	63	4	0	31	1.15
629650--629678	2	14.5	2	100	0	58	51	0	0	48	1.00
633926--633969	2	22.0	2	86	9	63	50	4	45	0	1.22
638137--638208	36	2.0	36	100	0	144	36	16	22	25	1.94
644794--644851	25	2.3	26	84	3	73	63	0	1	34	1.04
646572--646607	2	18.0	2	100	0	72	0	50	0	50	1.00
646858--646940	13	6.7	13	71	20	54	44	0	2	53	1.13
647093--647167	32	2.4	31	84	2	96	58	0	0	41	0.98
647119--647177	19	3.3	18	79	18	61	50	0	0	49	1.00
652505--652615	38	2.9	38	84	7	138	27	8	28	35	1.86
654835--655124	145	2.0	145	97	0	553	27	14	19	38	1.91
657229--657328	38	2.6	38	90	3	148	29	9	29	33	1.88
657869--657900	16	2.0	16	100	0	64	18	6	31	43	1.75
671593--671625	2	16.5	2	100	0	66	51	0	0	48	1.00
676437--676475	21	1.9	21	84	5	53	64	5	0	30	1.15
677620--677656	2	18.5	2	100	0	74	51	0	0	48	1.00
681111--681165	20	2.8	19	86	13	69	40	1	0	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681500--681553	16	3.2	17	82	12	67	57	0	0	42	0.98
681524--681591	28	2.4	29	73	4	68	55	0	0	44	0.99
681568--681656	41	2.2	41	82	8	101	52	2	1	43	1.20
681625--681681	28	2.0	30	87	12	86	45	3	0	50	1.18
682491--682543	15	3.5	15	75	10	63	37	0	3	58	1.16
682994--683050	23	2.7	20	75	19	53	50	0	0	49	1.00
686620--686679	22	2.8	22	80	14	72	56	1	1	40	1.19
687313--687416	32	3.5	29	72	17	70	41	0	1	55	1.17
687345--687417	32	2.3	33	74	19	75	41	1	2	54	1.23
687408--687449	15	2.6	16	81	11	50	23	0	7	69	1.13
687415--687450	15	2.3	15	90	4	54	27	0	8	63	1.23
687455--687494	21	1.9	21	85	10	55	57	0	2	40	1.12
692314--692341	2	14.0	2	100	0	56	50	0	50	0	1.00
693916--693963	21	2.3	21	78	7	53	41	0	0	58	0.98
695298--695357	22	2.7	22	97	0	111	56	0	0	43	0.99
698213--698237	3	8.3	3	100	0	50	32	0	0	68	0.90
698650--698680	13	2.5	12	90	10	53	51	0	0	48	1.00
699485--699516	3	10.7	3	100	0	64	31	0	0	68	0.90
701193--701237	3	15.0	3	100	0	90	66	0	33	0	0.92
706545--706595	24	2.1	24	85	0	66	45	1	0	52	1.12
707571--707602	2	16.0	2	100	0	64	50	0	0	50	1.00
713851--713967	16	6.5	17	71	23	71	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713846--713971	18	6.8	18	70	16	80	53	0	0	46	1.00
713847--713945	16	6.1	17	78	16	77	51	0	0	48	1.00
713868--713914	24	2.0	23	84	16	60	46	0	0	53	1.00
713864--713972	32	3.5	33	78	13	124	53	0	0	46	1.00
713921--713981	28	2.1	30	81	6	72	55	1	1	40	1.19
714084--714113	3	10.0	3	100	0	60	66	0	0	33	0.92
714926--714958	10	3.3	10	84	16	50	45	6	0	48	1.27
715108--715164	8	6.4	9	70	25	50	29	0	0	70	0.88
715099--715146	17	2.8	17	78	15	55	29	0	0	70	0.87
715099--715164	16	4.0	16	78	9	62	30	0	0	69	0.88
715099--715182	26	3.0	27	78	18	84	30	2	0	66	1.04
715099--715162	18	3.6	17	80	19	69	29	0	0	70	0.88
715130--715182	19	2.8	18	82	8	52	32	3	0	64	1.12
715099--715182	10	8.6	10	75	21	56	30	2	0	66	1.04
716176--716202	2	13.5	2	100	0	54	51	0	0	48	1.00
718742--718766	2	12.5	2	100	0	50	48	0	0	52	1.00
722822--722888	16	3.9	16	72	12	53	46	2	0	50	1.16
722869--722947	25	3.2	25	66	16	58	54	7	0	37	1.29
722966--723008	10	4.3	10	81	18	54	39	2	0	58	1.11
723020--723098	6	13.2	6	70	10	54	34	1	1	63	1.11
723048--723102	19	2.9	19	83	5	58	38	1	1	58	1.20
723165--723222	21	2.7	21	83	5	62	51	1	0	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724357--724410	19	2.9	19	76	10	58	42	0	1	55	1.10
724407--724435	15	2.0	15	93	6	51	51	0	0	48	1.00
726563--726631	38	1.9	33	83	13	84	7	13	17	62	1.52
727505--727689	34	5.5	34	87	3	257	40	26	7	25	1.82
732100--732284	34	5.5	34	87	3	257	40	26	7	25	1.82
733697--733729	2	16.5	2	100	0	66	48	0	51	0	1.00
736487--736539	28	1.9	27	85	11	72	64	0	1	33	1.05
737764--737806	21	2.0	21	82	8	52	2	34	16	46	1.60
741042--741077	2	18.0	2	100	0	72	50	0	50	0	1.00
742044--742107	25	2.6	25	85	5	85	34	0	0	65	0.93
742052--742114	15	4.6	14	79	14	53	36	0	0	63	0.95
742050--742114	14	4.8	14	77	12	64	35	0	0	64	0.94
742896--742920	1	25.0	1	100	0	50	100	0	0	0	0.00
745849--745874	2	13.0	2	100	0	52	50	0	0	50	1.00
746068--746110	20	2.2	20	86	0	59	25	0	2	72	0.97
746533--746575	18	2.3	19	84	4	52	30	0	4	65	1.13
746547--746589	22	1.9	22	85	4	59	27	0	4	67	1.10
746848--746911	11	5.7	12	75	12	64	29	3	1	65	1.17
746953--746990	17	2.2	18	90	4	60	57	0	0	42	0.98
746982--747056	16	4.2	17	76	17	64	48	1	0	50	1.09
747165--747238	36	2.1	36	89	0	112	25	16	13	44	1.84
747605--747672	16	4.6	16	65	26	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747657--747721	10	5.9	11	71	18	55	58	0	0	41	0.98
747663--747721	15	3.9	15	69	22	52	61	0	0	38	0.96
747780--747825	25	1.9	24	86	8	67	65	0	0	34	0.93
749464--749524	6	10.2	6	79	13	63	59	0	3	37	1.14
749464--749545	42	1.9	42	85	7	112	56	0	3	40	1.17
749464--749540	11	6.4	12	76	18	54	55	0	3	40	1.18
749464--749527	11	5.9	11	75	18	55	57	0	3	39	1.14
750345--750379	14	2.5	14	90	9	54	57	0	0	42	0.99
752022--752118	27	3.8	24	74	14	77	48	17	10	23	1.78
752041--752118	27	2.9	27	80	1	102	50	17	10	21	1.76

Tables:   1   2   3   4   5   6   7   8