genome.fa.s246.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold246
Parameters: 2 7 7 80 10 50 1000
Length:  1425817

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 935 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1251775--1251801	6	4.5	6	100	0	54	37	18	0	44	1.50
1252929--1252979	21	2.5	21	73	17	54	43	1	0	54	1.11
1253438--1253485	19	2.5	20	86	10	64	37	4	0	58	1.18
1254463--1254491	2	14.5	2	100	0	58	48	0	0	51	1.00
1254702--1254731	2	15.0	2	100	0	60	50	0	50	0	1.00
1255104--1255128	1	25.0	1	100	0	50	0	100	0	0	0.00
1256265--1256291	2	13.5	2	100	0	54	51	0	0	48	1.00
1260678--1260706	2	14.5	2	100	0	58	51	48	0	0	1.00
1264296--1264320	12	2.1	12	100	0	50	24	8	8	60	1.52
1274797--1274846	2	25.0	2	95	0	91	52	0	0	48	1.00
1282930--1283153	34	6.6	33	83	4	259	25	7	25	41	1.81
1282930--1283153	102	2.2	102	86	7	328	25	7	25	41	1.81
1287555--1287774	34	6.5	34	84	2	255	25	8	25	40	1.83
1287555--1287774	102	2.2	102	87	4	318	25	8	25	40	1.83
1289487--1289513	2	13.5	2	100	0	54	51	0	0	48	1.00
1294845--1294877	13	2.4	14	95	5	59	45	0	6	48	1.27
1297439--1297480	18	2.3	18	91	0	66	21	14	14	50	1.78
1303784--1303821	4	9.2	4	97	2	67	2	23	0	73	0.95
1306058--1306090	2	16.5	2	100	0	66	0	48	0	51	1.00
1308343--1308369	2	13.5	2	100	0	54	51	0	0	48	1.00
1308470--1308510	3	13.7	3	94	0	73	65	0	2	31	1.05
1309496--1309530	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1316325--1316355	7	4.3	7	95	4	53	32	41	25	0	1.56
1316491--1316521	14	2.2	14	100	0	62	54	16	16	12	1.71
1322871--1322912	19	2.4	18	84	11	52	42	2	4	50	1.36
1325933--1325987	14	4.2	14	70	25	57	29	1	18	50	1.57
1326022--1326140	14	8.3	14	77	2	58	33	9	15	42	1.78
1326022--1326083	28	2.2	29	85	8	83	30	6	17	45	1.74
1326090--1326153	14	4.4	15	81	13	71	39	12	6	42	1.68
1326102--1326159	14	4.1	14	84	2	71	41	10	8	39	1.70
1325976--1326168	72	2.7	72	74	1	172	35	9	13	41	1.78
1326927--1326954	2	14.0	2	100	0	56	50	0	0	50	1.00
1327292--1327320	2	14.5	2	100	0	58	51	0	48	0	1.00
1329579--1329617	19	2.1	19	85	0	51	41	0	2	56	1.13
1331307--1331336	2	15.0	2	100	0	60	0	50	0	50	1.00
1335586--1335612	2	13.5	2	100	0	54	0	48	0	51	1.00
1341605--1341639	2	17.5	2	87	0	52	45	2	2	48	1.32
1341684--1341708	6	4.2	6	100	0	50	36	16	16	32	1.90
1342390--1342420	3	10.3	3	100	0	62	35	0	0	64	0.94
1342466--1342490	9	2.8	9	100	0	50	0	80	0	20	0.72
1352434--1352525	14	6.3	15	69	13	59	34	10	15	39	1.82
1353497--1353526	15	2.0	15	93	0	51	23	26	20	30	1.98
1355873--1355928	28	2.0	28	82	0	67	30	25	12	32	1.92
1356316--1356356	16	2.6	16	78	17	50	46	2	2	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1356542--1356583	14	3.0	14	80	13	50	33	26	16	23	1.96
1356804--1356837	4	8.5	4	93	0	59	20	0	2	76	0.92
1359246--1359282	2	18.5	2	100	0	74	48	0	0	51	1.00
1366684--1366718	2	17.5	2	100	0	70	48	0	0	51	1.00
1367769--1367798	2	15.0	2	100	0	60	50	0	0	50	1.00
1369227--1369253	3	9.0	3	100	0	54	33	0	0	66	0.92
1370953--1371001	21	2.4	21	93	3	82	42	2	4	51	1.32
1371172--1371219	22	2.1	23	92	3	80	43	0	0	56	0.99
1371305--1371371	30	2.2	31	82	12	77	55	0	0	44	0.99
1371653--1371706	23	2.2	25	80	9	67	9	5	5	79	1.04
1371744--1371852	28	3.9	28	81	9	107	26	1	7	64	1.30
1378084--1378230	38	3.9	38	89	3	206	29	12	28	29	1.93
1378084--1378230	76	1.9	76	91	0	240	29	12	28	29	1.93
1380960--1381697	247	3.0	247	90	1	1131	36	18	15	29	1.92
1383408--1383500	41	2.3	41	80	9	109	21	12	19	46	1.83
1384633--1384669	17	2.2	18	85	9	51	32	0	8	59	1.27
1384663--1384692	2	14.5	2	93	6	51	46	0	3	50	1.18
1385630--1385673	12	3.1	15	78	21	51	43	2	0	54	1.12
1391303--1391356	28	1.9	28	88	0	81	37	14	24	24	1.93
1393753--1393795	6	7.3	6	92	2	70	2	0	34	62	1.08
1394717--1394747	16	1.9	16	93	0	53	61	0	0	38	0.96
1395135--1395223	8	10.8	8	74	13	65	39	1	0	59	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1395135--1395186	15	3.5	15	77	17	54	40	0	0	59	0.97
1395142--1395238	51	1.9	52	82	14	123	39	1	0	59	1.04
1395140--1395250	18	6.6	18	66	22	71	37	0	0	61	1.02
1396025--1396053	9	3.0	10	90	10	51	0	17	0	82	0.66
1401044--1401751	21	34.1	21	67	13	109	41	27	1	29	1.65
1401084--1401137	28	1.9	28	88	0	81	40	20	0	38	1.53
1401196--1401752	7	79.7	7	70	13	260	42	27	1	29	1.64
1401645--1401736	29	3.2	29	71	15	75	38	31	0	30	1.58
1415220--1415271	20	2.7	20	80	11	63	55	13	19	11	1.68
1415652--1415696	20	2.3	20	96	3	83	60	4	17	17	1.53
1415609--1415734	57	2.2	57	80	5	130	53	10	19	16	1.72
1415743--1415791	20	2.5	20	82	0	62	48	14	18	18	1.80
1417316--1417358	21	2.0	21	86	0	59	53	25	0	20	1.46
1417537--1417657	43	2.9	42	82	8	131	45	34	0	19	1.51
1417512--1417657	7	21.0	7	80	10	140	45	38	0	16	1.48
1417531--1417657	20	6.1	20	80	11	123	45	35	0	18	1.50
1417735--1417810	15	5.1	15	83	3	55	6	0	53	39	1.27
1417754--1417814	15	4.2	15	87	4	90	3	0	63	32	1.10
1417739--1417814	22	3.5	22	77	13	84	5	0	59	35	1.20
1417887--1422765	22	222.6	20	71	21	2100	41	40	14	4	1.65
1417879--1425716	7	1068.6	7	74	17	3344	40	42	10	6	1.65
1417879--1422673	46	107.0	43	72	19	2497	41	40	14	4	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1418024--1422712	30	155.2	29	71	21	1484	41	40	14	4	1.65
1418024--1422703	139	33.5	132	70	20	985	41	40	14	4	1.65
1418024--1422673	15	297.3	16	71	20	1330	41	40	14	4	1.65
1417886--1422712	166	29.2	160	71	21	1228	41	40	14	4	1.65
1422774--1424656	79	23.7	81	73	19	950	42	41	0	15	1.52
1425477--1425767	21	14.0	21	75	13	124	43	49	2	4	1.33
1425698--1425776	13	5.9	13	77	12	72	43	41	0	15	1.46

Tables:   1   2   3   4   5   6   7   8

The End!