genome.fa.s246.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold246
Parameters: 2 7 7 80 10 50 1000
Length:  1425817

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 935 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758459--758512	16	3.4	16	73	16	58	40	3	0	55	1.17
762395--762419	2	12.5	2	100	0	50	52	48	0	0	1.00
762836--762886	26	2.0	26	88	7	77	50	5	7	35	1.55
763834--763870	2	19.5	2	89	10	60	51	0	0	48	1.00
776791--776830	19	2.1	19	86	9	55	35	12	2	50	1.54
776909--777041	30	4.5	29	68	12	76	51	2	5	41	1.37
776963--777050	28	3.1	28	72	6	70	57	2	4	35	1.31
779017--779067	25	2.0	25	84	7	66	64	0	5	29	1.17
780096--780140	10	4.7	10	81	10	58	35	0	15	48	1.45
786123--786164	18	2.3	19	87	4	59	30	0	0	69	0.89
786195--786396	103	2.0	103	81	5	239	55	10	5	28	1.56
789956--789984	2	15.0	2	92	7	51	48	0	0	51	1.00
790616--790652	3	12.3	3	100	0	74	32	0	0	67	0.91
791663--791703	20	2.0	20	86	9	57	56	0	4	39	1.21
793755--793814	26	2.3	26	82	8	68	33	3	1	61	1.22
799596--799640	20	2.2	20	88	0	63	51	0	2	46	1.13
800141--800181	17	2.5	17	88	4	66	36	0	0	63	0.95
808150--808177	2	14.0	2	100	0	56	50	0	50	0	1.00
809621--809683	15	4.1	15	73	15	56	49	1	0	49	1.10
811895--811931	2	18.5	2	100	0	74	48	0	0	51	1.00
812349--812395	17	2.7	18	77	12	53	48	0	2	48	1.13
815845--815912	33	2.2	32	84	7	86	45	2	7	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
823314--823351	2	19.0	2	100	0	76	50	0	0	50	1.00
826202--826239	17	2.2	18	90	4	60	36	10	5	47	1.61
826212--826268	16	3.7	15	77	17	55	36	7	10	45	1.66
826637--826716	41	2.0	41	82	5	99	38	11	35	15	1.83
828185--828336	34	4.5	35	81	8	161	39	23	7	29	1.83
828186--828336	68	2.2	68	82	2	178	39	23	7	29	1.83
832525--832565	16	2.6	16	80	0	55	43	0	0	56	0.99
833588--833682	24	4.2	24	71	12	69	51	0	1	47	1.07
833589--833644	12	4.6	13	78	12	57	48	0	0	51	1.00
833657--833695	16	2.4	16	86	0	60	46	0	2	51	1.14
833588--833695	12	9.7	11	66	19	55	50	0	0	48	1.07
834605--834816	115	1.8	115	92	2	363	36	15	19	27	1.92
836601--836649	22	2.2	22	85	10	64	65	8	2	24	1.31
837602--837711	6	17.7	6	66	17	55	38	0	0	61	0.96
837592--837665	25	3.0	25	74	18	64	37	0	0	62	0.96
837607--837702	12	7.7	12	75	20	81	38	0	0	61	0.96
837619--837723	19	5.7	19	69	19	64	39	0	0	60	0.97
837571--837699	63	2.0	64	92	1	215	39	1	0	58	1.13
837617--837726	12	8.8	12	69	16	64	39	0	0	60	0.97
837639--837717	14	5.5	15	72	17	60	40	0	0	59	0.97
837592--837728	63	2.2	63	89	4	204	37	0	0	62	0.96
838919--838951	17	2.0	16	94	5	57	21	0	0	78	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840336--840378	17	2.3	20	84	11	56	46	0	2	51	1.13
840308--840408	52	1.9	52	80	7	116	48	0	0	50	1.07
842800--842849	20	2.4	21	87	12	77	44	6	4	46	1.47
845140--845168	9	3.3	9	90	9	51	79	0	0	20	0.74
845906--845945	2	20.0	2	89	0	62	45	0	5	50	1.23
849152--849206	19	2.8	20	72	8	58	54	0	0	45	0.99
849824--849862	19	2.0	20	90	5	62	48	7	0	43	1.31
851754--851797	22	1.9	24	86	9	65	54	2	0	43	1.12
852314--852358	23	1.9	24	82	13	58	55	2	0	42	1.12
854108--854148	20	2.0	20	90	0	64	24	4	0	70	1.06
856096--856136	2	20.5	2	100	0	82	0	51	0	48	1.00
858574--858598	2	12.5	2	100	0	50	52	0	0	48	1.00
858820--858882	31	2.1	31	81	3	74	57	0	0	42	0.99
866290--866344	23	2.4	23	80	17	62	49	0	0	50	1.00
879672--879699	3	9.3	3	100	0	56	35	0	0	64	0.94
882870--882911	1	42.0	1	92	0	57	92	0	2	4	0.44
882867--882908	21	2.0	21	100	0	84	85	0	4	9	0.72
882916--882972	21	2.7	21	97	0	105	33	10	19	36	1.86
883028--883095	19	3.9	19	78	21	85	35	11	14	38	1.83
883049--883073	13	1.9	13	100	0	50	36	16	16	32	1.90
883030--883092	32	2.0	32	96	0	117	34	12	15	36	1.86
883135--883160	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
883115--883181	33	2.0	33	88	0	98	25	14	16	43	1.86
885631--885703	27	2.7	27	87	6	94	23	34	21	20	1.97
885686--885856	51	3.3	51	79	4	198	29	26	11	32	1.92
885839--885920	28	2.9	28	82	7	96	24	31	17	26	1.97
898319--898372	15	3.7	15	90	5	83	90	7	1	0	0.51
898320--898372	1	53.0	1	84	0	70	92	5	1	0	0.45
899354--899976	55	11.3	55	91	2	941	29	29	20	20	1.98
900572--900610	1	39.0	1	92	0	51	92	0	2	5	0.46
900569--900608	20	2.0	20	100	0	80	85	0	5	10	0.75
900615--900671	21	2.7	21	97	0	105	33	10	19	36	1.86
900727--900794	19	3.9	19	78	21	85	35	11	14	38	1.83
900748--900772	13	1.9	13	100	0	50	36	16	16	32	1.90
900729--900791	32	2.0	32	96	0	117	34	12	15	36	1.86
900834--900859	13	2.0	13	100	0	52	30	15	15	38	1.88
900814--900880	33	2.0	33	88	0	98	25	14	16	43	1.86
903328--903400	27	2.7	27	87	6	94	23	34	21	20	1.97
903383--903553	51	3.3	51	79	4	198	29	26	11	32	1.92
903214--903553	105	3.2	105	69	12	273	30	26	11	31	1.92
903536--903617	28	2.9	28	82	7	96	24	31	17	26	1.97
905369--905407	2	19.5	2	94	0	69	48	0	2	48	1.15
909506--909541	18	1.9	19	88	5	56	50	0	0	50	1.00
909901--909941	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912527--912631	22	4.4	23	71	21	83	48	1	0	49	1.12
912545--912626	36	2.3	36	78	2	94	50	2	0	47	1.14
912639--912663	2	12.5	2	100	0	50	52	0	0	48	1.00
916062--916092	3	10.3	3	92	0	53	64	3	0	32	1.09
922671--922725	18	3.1	18	89	5	76	36	3	0	60	1.15
923536--923574	3	13.0	3	88	0	60	61	0	5	33	1.18
924026--924076	25	2.0	25	82	14	61	43	0	5	50	1.26
924393--924499	30	3.7	30	77	19	97	42	0	1	56	1.10
924428--924515	20	4.3	21	75	5	74	42	0	1	56	1.06
924451--924518	23	3.1	22	74	14	68	41	0	1	57	1.08
924776--924847	35	2.2	34	85	9	96	43	1	0	55	1.08
926187--926271	28	3.2	27	71	17	79	52	1	2	43	1.21
927618--927650	2	16.5	2	100	0	66	51	0	48	0	1.00
934226--934266	15	2.8	14	88	7	55	0	12	2	85	0.70
937528--937565	2	19.0	2	100	0	76	50	0	0	50	1.00
946388--946441	27	2.1	26	83	10	67	59	3	3	33	1.33
946486--946600	43	2.7	43	95	2	205	41	23	17	17	1.89
951984--952017	2	17.0	2	100	0	68	50	0	0	50	1.00
968489--968707	108	2.0	108	95	0	393	42	20	15	21	1.88
969857--969897	20	2.0	20	85	4	55	31	0	0	68	0.90
969862--969900	18	2.2	18	85	0	51	28	0	0	71	0.86
969885--969923	19	2.1	19	85	9	53	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974508--974557	18	2.7	18	82	11	66	64	2	0	34	1.05
974724--974774	15	3.6	14	79	12	59	52	1	0	45	1.12
980935--981084	63	2.4	63	95	0	273	20	23	20	35	1.96
982651--982693	18	2.4	18	81	14	61	2	41	25	30	1.68
989708--989740	16	2.1	16	88	11	50	57	0	0	42	0.98
993292--993325	11	3.2	10	88	12	50	64	0	0	35	0.94
993318--993349	13	2.5	13	95	5	57	40	0	0	59	0.97
994568--994605	2	19.0	2	100	0	76	0	50	0	50	1.00
1001085--1001144	29	2.1	29	100	0	120	38	18	23	20	1.93
1003578--1003636	29	2.0	30	83	9	77	59	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8