genome.fa.s251.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold251
Parameters: 2 7 7 80 10 50 1000
Length:  763550

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 560 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338913--338940	13	2.2	13	100	0	56	39	17	14	28	1.89
338894--338960	33	2.0	33	85	5	91	43	13	13	29	1.82
339711--340199	49	9.8	49	77	5	464	31	16	26	25	1.97
339805--340199	150	2.6	147	84	3	497	31	16	26	25	1.96
340211--340601	29	13.7	28	80	8	362	21	17	29	31	1.96
340240--340601	86	4.2	84	81	7	426	21	17	29	31	1.96
340199--340601	171	2.4	170	84	5	501	22	18	29	30	1.97
342028--342088	10	5.9	10	82	5	77	1	3	9	85	0.78
343172--343197	13	2.0	13	100	0	52	38	15	15	30	1.88
343154--343217	32	2.0	33	87	3	94	40	17	14	28	1.88
357358--357412	20	2.7	21	85	2	76	41	14	14	29	1.85
357453--357521	33	2.1	33	89	5	104	37	18	11	31	1.87
363435--363465	8	3.8	8	95	4	53	12	0	25	61	1.32
363643--363680	13	2.9	13	88	0	58	31	13	18	36	1.89
364114--364158	20	2.1	22	84	8	58	17	48	31	2	1.59
366251--366319	33	2.1	33	86	5	95	36	18	13	31	1.89
367197--367224	13	2.2	13	100	0	56	39	17	14	28	1.89
367179--367244	33	2.0	33	88	5	98	40	13	15	30	1.85
367272--367297	13	2.0	13	100	0	52	30	15	15	38	1.88
373698--373788	37	2.5	36	92	3	148	25	16	14	43	1.85
374071--374211	39	3.4	39	72	16	138	28	26	19	25	1.99
374181--374567	49	7.9	49	77	5	336	24	26	17	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374003--374450	87	4.9	94	84	5	422	25	24	18	31	1.98
374181--374548	98	3.8	98	81	4	379	24	25	17	32	1.97
375313--375340	13	2.2	13	100	0	56	28	14	17	39	1.89
381555--381685	70	1.9	70	96	0	244	34	12	19	33	1.89
386589--386664	20	3.8	20	92	1	109	35	17	15	31	1.91
393116--393154	13	3.0	13	92	0	69	35	17	15	30	1.91
393212--393262	21	2.4	22	93	6	95	37	11	23	27	1.90
393308--393444	53	2.6	53	94	1	238	27	17	17	37	1.92
393504--393544	21	2.0	21	85	9	57	39	9	12	39	1.76
395073--395113	20	2.0	20	100	0	82	14	24	31	29	1.95
396176--396248	36	2.0	36	94	0	128	31	9	17	41	1.82
396176--396269	36	2.9	32	83	12	95	34	8	18	39	1.81
396860--396886	13	2.1	13	100	0	54	29	14	14	40	1.86
396843--396905	32	1.9	33	87	9	94	28	15	14	41	1.87
397764--397788	12	2.1	12	100	0	50	0	16	0	84	0.63
399823--399940	59	2.0	59	98	0	227	36	10	21	32	1.87
403046--403503	168	2.7	164	82	5	515	28	12	7	51	1.67
403046--403507	166	2.8	164	81	6	509	28	12	8	51	1.68
403218--403593	166	2.3	165	80	6	413	28	13	9	48	1.73
405136--405448	130	2.4	127	81	7	387	34	9	12	43	1.75
405237--405497	128	2.0	128	79	7	280	34	10	12	42	1.76
405813--405885	20	3.6	20	81	3	101	35	13	19	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405813--405907	41	2.3	42	96	1	174	40	12	17	29	1.87
405946--405971	13	2.0	13	100	0	52	38	15	15	30	1.88
410033--410071	15	2.6	15	91	0	60	51	15	20	12	1.76
412084--412161	20	3.6	21	73	15	70	25	12	16	44	1.83
412148--412186	13	3.0	13	96	0	69	30	17	15	35	1.91
413992--414037	16	2.8	16	93	6	74	28	2	39	30	1.69
414644--414716	20	3.6	20	81	3	101	35	13	19	31	1.91
414644--414738	41	2.3	42	96	1	174	40	12	17	29	1.87
414777--414802	13	2.0	13	100	0	52	38	15	15	30	1.88
416068--417415	155	8.6	154	80	5	1281	22	16	22	38	1.93
416030--417390	625	2.2	627	89	1	2021	22	16	21	38	1.93
426283--427711	31	45.7	31	79	12	771	22	30	14	32	1.94
426282--427036	61	12.4	62	79	10	788	24	29	16	29	1.97
426985--427784	99	8.3	95	81	9	793	19	32	12	35	1.89
426985--427783	159	4.9	162	83	6	857	19	32	12	35	1.89
426985--427791	258	3.1	257	87	4	1118	19	32	12	35	1.90
427836--428043	39	5.0	39	74	12	146	29	25	17	26	1.98
427841--428093	87	3.0	85	85	4	314	28	26	17	27	1.98
428010--428147	49	2.8	49	83	0	177	25	23	17	33	1.96
434604--434648	6	7.3	6	82	12	56	82	15	0	2	0.77
434607--434675	19	3.6	18	78	18	59	82	8	5	2	0.92
434606--434640	17	1.9	19	88	11	56	80	17	0	2	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434645--434729	12	6.7	12	69	21	57	78	2	14	4	1.00
434638--434697	25	2.3	26	82	2	77	81	3	11	3	0.93
437030--437123	35	2.7	35	84	1	116	21	25	10	42	1.85
437091--437421	48	6.9	48	86	2	441	16	20	20	42	1.89
437091--437419	144	2.3	144	91	1	516	16	20	20	42	1.89
437501--437914	44	9.4	44	71	7	214	20	27	14	37	1.92
437448--437913	88	5.3	88	82	3	526	20	26	14	38	1.91
438092--438210	42	2.8	42	91	2	159	22	27	16	32	1.96
438558--438680	42	2.9	42	72	13	108	21	26	14	37	1.92
438705--438805	42	2.4	42	81	3	105	12	26	17	42	1.86
438902--439009	42	2.6	41	85	7	137	18	26	18	36	1.94
439042--439258	85	2.6	85	79	10	228	20	28	15	35	1.93
448637--448690	20	2.7	19	75	18	56	38	14	14	31	1.87
452365--452424	23	2.6	23	89	0	93	26	20	18	35	1.95
457209--457274	35	1.9	34	90	3	105	34	12	24	28	1.91
457545--457578	16	2.1	16	89	10	52	38	5	29	26	1.80
463491--463590	52	1.9	52	89	0	155	33	20	7	40	1.79
463608--463727	52	2.3	52	89	2	188	29	25	9	36	1.87
463411--463732	133	2.4	133	81	6	359	29	26	8	35	1.86
464976--465029	21	2.6	21	82	5	65	33	14	16	35	1.90
465056--465127	20	3.5	20	81	9	67	34	13	12	38	1.83
467075--467100	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467057--467120	32	2.0	33	90	3	103	39	18	14	28	1.90
473286--473323	13	2.9	13	96	0	67	34	15	15	34	1.90
473435--473480	21	2.2	20	81	11	58	32	19	4	43	1.71
475834--475859	13	2.0	13	100	0	52	38	15	15	30	1.88
475816--475879	32	2.0	33	90	3	103	39	18	14	28	1.90
479507--479631	20	5.8	20	75	20	117	26	17	13	42	1.86
479507--479680	89	1.9	89	91	1	285	27	17	13	40	1.88
488182--488241	20	2.9	21	83	13	79	36	15	11	36	1.83
492594--492634	22	1.9	22	90	5	66	36	7	9	46	1.65
493376--493406	3	10.3	3	92	0	53	38	0	32	29	1.57
497225--498439	156	7.8	155	79	5	1020	38	19	16	25	1.92
497226--498439	312	3.9	312	78	4	1128	38	19	16	25	1.92
497225--498423	468	2.6	462	79	5	1229	38	19	16	24	1.92
499549--499594	13	3.5	13	93	0	74	4	28	0	67	1.10
499802--499872	38	2.0	35	83	10	90	9	25	22	42	1.84
500090--500188	38	2.6	38	81	0	135	18	25	15	41	1.89
500197--500257	20	2.9	21	83	9	63	6	11	27	54	1.61
500431--500467	13	2.9	13	85	14	51	0	27	0	72	0.84
500436--500477	21	2.0	21	85	0	57	0	30	0	69	0.89
500941--500987	20	2.2	22	81	11	62	78	0	6	14	0.93
506985--507123	44	3.1	44	64	27	103	40	18	14	26	1.89
506980--507161	90	2.0	90	91	2	294	41	18	14	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508913--509503	34	17.5	34	68	7	247	39	15	14	31	1.87
508916--509079	33	4.8	33	75	6	107	41	13	14	30	1.84
509007--509102	32	2.9	32	73	10	86	46	16	11	25	1.80
508957--509268	133	2.3	135	80	9	350	41	14	13	30	1.83
511287--511324	19	2.0	20	89	5	60	84	5	10	0	0.77
523177--523224	23	2.1	23	88	3	71	79	6	8	6	1.07
523183--523232	23	2.2	23	82	7	57	80	10	6	4	1.02
524408--524702	113	2.6	113	80	4	306	30	28	18	22	1.97
524669--525387	32	22.8	32	74	9	430	29	29	17	23	1.97
524437--525164	85	8.1	87	75	11	301	29	28	17	23	1.97

Tables:   1   2   3   4   5