genome.fa.s251.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold251
Parameters: 2 7 7 80 10 50 1000
Length:  763550

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 560 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678801--678929	52	2.5	52	92	5	215	27	18	18	35	1.94
678938--678962	13	1.9	13	100	0	50	36	16	16	32	1.90
679005--679102	19	5.8	17	71	28	77	36	18	12	32	1.88
679000--679100	32	3.1	32	95	1	175	35	18	11	33	1.88
679024--679080	13	3.9	13	76	24	60	33	17	14	35	1.90
679663--679773	27	4.1	27	86	4	152	26	30	10	32	1.90
679652--679773	54	2.2	54	88	5	174	24	30	12	32	1.92
679763--680637	28	30.8	28	83	5	823	30	29	16	22	1.96
681601--681675	20	3.8	20	80	0	78	33	10	12	44	1.76
682448--682475	13	2.2	13	100	0	56	28	14	17	39	1.89
682428--682493	33	2.0	33	88	5	98	30	15	13	40	1.85
687545--687651	38	2.8	38	76	0	124	36	22	14	27	1.92
691770--691890	52	2.3	52	94	0	215	28	17	18	35	1.93
691770--691910	52	2.7	51	87	4	203	30	17	18	34	1.94
691899--691923	13	1.9	13	100	0	50	36	16	16	32	1.90
691987--692011	13	1.9	13	100	0	50	32	16	16	36	1.90
691966--692031	32	2.0	33	88	2	98	37	13	13	34	1.84
697699--697816	38	3.1	37	78	7	105	39	19	12	27	1.88
699442--699489	21	2.3	21	96	3	89	4	43	0	52	1.20
700423--700477	13	3.8	13	75	25	56	36	12	18	32	1.88
700403--700503	32	3.1	32	92	1	166	35	10	17	35	1.85
700541--700565	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700556--700702	52	2.8	50	87	6	204	35	19	15	29	1.93
704232--704281	14	3.6	14	74	15	50	32	2	4	62	1.25
713380--713508	52	2.5	52	96	0	231	30	17	17	34	1.93
713380--713528	52	2.9	51	89	4	219	31	17	17	33	1.93
713517--713541	13	1.9	13	100	0	50	36	16	16	32	1.90
713582--713648	33	2.0	33	88	0	98	40	14	11	32	1.83
713604--713628	13	1.9	13	100	0	50	32	16	16	36	1.90
714402--714528	67	1.9	68	86	1	184	38	12	25	23	1.90
714518--714631	52	2.1	55	85	4	153	38	14	22	23	1.92
714541--715343	49	16.8	48	83	6	979	30	17	26	25	1.97
714475--715343	98	9.0	98	85	6	1114	30	17	26	25	1.97
714541--715343	287	2.8	287	95	0	1399	30	17	26	25	1.97
715343--715487	66	2.2	67	90	7	226	20	18	35	26	1.95
715336--715475	33	4.4	32	88	7	196	17	17	35	28	1.93
715343--715496	65	2.3	66	87	6	224	19	17	36	26	1.94
715382--715570	65	3.0	64	78	15	171	24	15	35	24	1.94
715472--715630	34	4.9	32	80	15	184	31	13	36	18	1.90
715480--715603	62	2.0	62	90	4	198	29	13	37	19	1.90
715509--715681	27	6.0	27	71	22	93	29	15	33	21	1.94
715536--715631	35	2.8	34	92	3	158	32	14	34	18	1.91
715661--715962	93	3.2	92	79	10	310	29	16	27	26	1.97
715633--715961	31	10.7	30	75	13	255	28	16	28	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716066--716103	16	2.3	17	86	4	51	26	5	23	44	1.74
723561--723587	12	2.2	12	100	0	54	55	14	0	29	1.40
723708--723871	50	3.3	50	92	0	274	42	14	28	15	1.86
724322--724380	27	2.1	27	84	12	75	64	5	27	3	1.30
724421--724520	37	2.5	39	82	12	107	35	38	19	8	1.81
724453--724520	18	3.8	17	76	16	66	33	38	20	7	1.81
725501--725967	79	5.9	79	93	0	765	26	24	15	32	1.95
725900--726034	52	2.6	51	81	6	148	28	22	12	36	1.91
725900--726045	51	2.8	51	79	7	145	28	21	11	38	1.89
728382--728434	20	2.6	21	79	11	65	41	11	16	30	1.84
728491--728601	51	2.2	52	91	1	179	28	15	14	41	1.86
729307--729370	19	3.7	19	76	23	86	32	12	18	35	1.89
729327--729351	13	1.9	13	100	0	50	36	16	16	32	1.90
729308--729383	32	2.4	32	95	0	134	31	14	18	35	1.91
730382--730420	20	2.0	20	89	0	60	23	17	12	46	1.83
743387--743466	10	8.0	10	74	14	58	78	16	5	0	0.91
743394--743459	14	4.5	14	71	17	53	78	15	6	0	0.93
743405--743459	12	4.5	13	78	17	55	80	14	5	0	0.89
744893--745031	28	4.9	28	79	6	145	31	31	17	18	1.95
744896--745074	28	6.0	29	71	18	93	28	30	16	24	1.96
745012--745202	34	5.6	34	81	3	170	18	32	14	34	1.91
745016--745202	102	1.8	100	84	7	252	18	33	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
745202--745975	52	15.8	51	79	9	667	25	27	16	30	1.97
745202--745976	100	7.9	100	82	9	655	25	27	16	30	1.97
745199--745771	287	2.0	282	84	6	731	25	27	16	30	1.97
745202--745989	148	5.4	146	80	7	721	24	27	16	31	1.97
746740--746798	19	3.4	18	73	26	65	33	11	16	37	1.86
746757--746781	13	1.9	13	100	0	50	36	16	16	32	1.90
746740--746813	32	2.3	32	92	0	121	33	13	16	36	1.88
747811--747849	20	2.0	20	89	0	60	23	17	12	46	1.83
751364--751407	21	2.0	21	82	13	52	31	13	4	50	1.62
754879--754908	15	2.0	15	100	0	60	33	13	0	53	1.40
756875--756920	18	2.4	19	86	13	60	43	0	4	52	1.21
760508--760542	14	2.5	14	90	0	61	5	45	5	42	1.51
760727--760784	31	2.0	29	86	10	82	43	0	0	56	0.99
760929--760972	21	2.2	19	84	8	52	68	6	0	25	1.14

Tables:   1   2   3   4   5

The End!