genome.fa.s26.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold26
Parameters: 2 7 7 80 10 50 1000
Length:  1656043

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 947 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663343--663507	86	1.9	86	82	7	210	23	30	31	15	1.95
667508--667556	2	24.5	2	100	0	98	48	0	0	51	1.00
668631--668692	13	5.2	13	74	21	55	33	14	12	38	1.84
668610--668683	34	2.2	34	97	0	139	35	17	10	36	1.85
672052--672233	50	3.6	50	87	1	258	27	15	13	43	1.84
672052--672234	100	1.8	100	90	0	294	27	15	13	43	1.84
672194--672234	20	2.0	21	90	4	66	31	17	9	41	1.82
673337--673390	21	2.7	19	78	15	65	37	12	16	33	1.87
673331--673390	19	3.1	19	79	13	68	40	13	15	31	1.85
673378--673403	13	2.0	13	100	0	52	38	15	15	30	1.88
673428--673482	20	2.7	21	83	5	69	34	14	10	40	1.81
677859--677973	51	2.3	51	81	11	139	30	26	11	32	1.91
683329--683374	23	2.0	23	83	8	58	34	2	10	52	1.49
692530--692589	19	3.0	20	75	15	54	43	15	11	30	1.82
695781--695806	13	2.0	13	100	0	52	30	15	15	38	1.88
695761--695824	32	2.0	33	87	3	94	28	14	17	40	1.88
695845--695917	20	3.6	20	81	9	76	30	16	13	39	1.87
695865--695920	20	2.8	20	89	5	78	30	16	14	39	1.88
696488--696550	21	3.3	21	63	28	59	41	17	3	38	1.65
696490--696560	35	2.0	35	100	0	142	39	18	2	39	1.65
698967--699131	84	2.0	84	83	7	210	24	18	3	52	1.61
701175--701200	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701155--701218	32	2.0	33	87	3	94	28	14	17	40	1.88
703583--703631	24	2.0	24	96	0	89	20	30	18	30	1.96
706249--706327	39	2.0	39	85	9	108	82	16	1	0	0.74
706251--706326	19	4.2	17	79	15	73	82	15	1	0	0.73
706255--706327	25	3.0	25	84	11	98	83	15	1	0	0.71
707619--707818	31	6.5	31	74	11	144	24	30	15	30	1.96
707618--707700	30	2.7	30	82	12	107	21	32	16	28	1.96
707735--707916	28	6.2	28	78	13	163	23	31	13	31	1.93
707734--707917	88	2.1	86	86	3	251	23	31	13	31	1.93
707775--707927	27	5.4	26	77	12	117	22	35	12	28	1.91
707775--707967	88	2.2	88	80	8	205	21	35	12	30	1.91
708021--708474	43	10.1	43	81	9	539	24	25	18	30	1.98
707963--708518	91	6.0	91	92	2	871	24	25	18	31	1.98
708476--708617	52	2.6	54	78	3	162	25	26	13	35	1.93
708425--708615	104	1.8	104	85	3	265	24	25	15	35	1.94
709303--709359	19	3.3	19	72	27	72	35	12	19	33	1.89
709316--709373	13	4.0	13	74	23	53	34	15	17	32	1.91
709303--709372	32	2.2	32	97	0	131	34	14	18	32	1.91
709391--709456	33	2.0	33	85	11	91	30	13	13	42	1.83
715038--715230	105	1.8	105	85	4	273	34	32	13	19	1.91
714989--715238	55	4.6	54	77	7	206	35	30	13	20	1.91
719354--719424	27	2.6	27	88	6	99	22	7	23	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721862--721907	21	2.1	22	84	4	58	30	19	30	19	1.97
723789--723859	27	2.6	27	88	6	99	22	7	23	46	1.76
727442--727466	2	12.5	2	100	0	50	48	52	0	0	1.00
729560--729585	13	2.0	13	100	0	52	7	30	23	38	1.83
733081--733120	16	2.5	16	84	11	55	10	20	30	40	1.85
733272--733304	14	2.2	16	89	10	52	39	0	0	60	0.97
733620--733644	2	12.5	2	100	0	50	52	0	0	48	1.00
734236--734269	17	1.9	18	88	5	52	58	0	2	38	1.13
734574--734666	40	2.4	40	94	3	163	32	0	17	50	1.46
739608--739887	147	1.9	147	89	2	438	33	11	12	42	1.80
740416--740466	26	2.0	26	84	7	68	45	3	0	50	1.20
740409--740471	15	4.3	15	80	13	78	44	3	0	52	1.17
740728--740761	14	2.3	15	85	10	52	44	11	5	38	1.65
747743--747774	2	17.0	2	87	12	50	50	0	0	50	1.00
747738--747774	12	3.0	13	88	7	51	45	2	0	51	1.15
749950--750002	22	2.3	25	87	12	78	49	5	0	45	1.26
749950--750002	24	2.3	23	90	6	81	49	5	0	45	1.26
751200--751234	2	17.5	2	87	0	52	48	2	2	45	1.32
752605--752668	23	2.7	23	75	2	65	56	1	1	40	1.18
754792--754873	39	2.1	39	97	0	155	45	3	14	36	1.63
755067--755201	51	2.7	50	81	6	157	45	11	11	31	1.76
755112--755149	20	1.9	20	100	0	76	52	5	10	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755245--755302	24	2.5	24	81	8	68	32	13	12	41	1.82
759190--759245	13	4.2	13	76	13	51	67	0	1	30	1.01
759798--759824	2	13.5	2	100	0	54	51	0	0	48	1.00
761063--761096	15	2.3	15	89	0	50	47	5	0	47	1.26
762770--762802	2	16.5	2	100	0	66	51	0	0	48	1.00
764126--764172	22	2.2	21	88	3	67	36	2	2	59	1.21
764158--764231	26	3.0	24	75	16	71	51	4	2	41	1.35
766251--766349	47	2.1	46	94	1	171	30	21	15	33	1.94
766891--766970	26	3.1	26	91	5	119	50	5	32	12	1.62
767077--767147	27	2.6	28	90	2	108	47	23	5	22	1.72
771552--771598	20	2.3	20	81	0	58	36	4	48	10	1.57
771680--771745	27	2.4	27	90	7	98	46	22	7	22	1.77
772894--772931	2	20.0	2	86	10	53	50	2	0	47	1.15
772891--772924	17	2.0	17	94	0	59	52	2	0	44	1.16
772894--772931	11	3.3	12	82	10	53	50	2	0	47	1.15
774784--774808	6	4.2	6	100	0	50	48	0	0	52	1.00
775398--775442	23	2.0	23	91	4	74	53	2	2	42	1.25
775468--775524	17	3.3	17	72	13	53	61	1	7	29	1.32
775905--775929	6	4.2	6	100	0	50	68	0	0	32	0.90
775916--775977	19	3.3	19	73	11	56	50	0	0	50	1.00
779312--779342	2	15.5	2	100	0	62	48	0	0	51	1.00
779580--779620	19	2.2	18	86	4	55	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
780684--780724	2	20.5	2	94	0	73	48	2	48	0	1.14
781499--781557	15	3.9	15	72	14	59	37	5	0	57	1.21
782229--782269	19	2.2	18	86	4	55	39	0	0	60	0.96
788960--789001	16	2.7	16	81	3	50	71	2	0	26	0.98
789229--789319	25	3.0	33	71	24	108	45	0	20	34	1.52
792462--792501	16	2.5	15	88	8	53	17	12	20	50	1.78
792441--792526	32	2.7	32	85	0	100	17	13	24	44	1.85
792622--792686	31	2.2	29	84	10	80	43	1	4	50	1.32
792629--792692	31	2.1	31	88	2	94	39	1	3	56	1.25
793605--793647	16	2.7	16	81	0	50	9	16	27	46	1.77
793949--793988	20	2.0	20	100	0	80	30	10	10	50	1.69
794886--794940	26	2.2	26	83	9	69	49	5	9	36	1.58
797422--797496	20	3.8	20	78	0	87	34	6	12	46	1.67
797516--797564	19	2.6	19	90	0	80	34	14	8	42	1.75
801215--801267	26	2.0	26	85	0	70	35	7	22	33	1.83
802420--802470	21	2.4	21	78	12	52	49	13	7	29	1.70
802676--802734	26	2.3	26	76	5	75	20	25	5	49	1.69
806186--806233	22	2.1	23	84	3	62	35	2	0	62	1.07
806345--806431	43	2.0	43	80	8	97	37	9	2	50	1.47
806913--806958	18	2.6	18	86	6	58	32	0	0	67	0.91
807672--807709	19	2.1	18	85	14	51	2	15	10	71	1.25
812716--812824	38	2.9	38	92	0	173	27	27	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
822270--822314	20	2.3	20	84	3	56	53	13	4	28	1.59
823693--823737	18	2.5	18	85	7	56	26	2	15	55	1.52
828244--828293	18	2.7	18	81	3	64	58	0	2	40	1.10
828759--828823	29	2.3	27	79	7	76	53	1	1	43	1.19
829075--829117	20	2.3	18	84	11	52	55	0	0	44	0.99
829251--829289	2	19.5	2	100	0	78	51	0	0	48	1.00
829414--829565	82	1.9	82	91	0	250	33	9	10	46	1.72
829959--830019	30	2.0	30	90	0	95	29	3	0	67	1.07
830378--830407	14	2.1	15	93	6	53	30	13	10	46	1.75
836681--836818	68	2.0	68	94	0	240	27	20	14	37	1.91

Tables:   1   2   3   4   5   6   7   8