genome.fa.s26.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold26
Parameters: 2 7 7 80 10 50 1000
Length:  1656043

Tables:   1   2   3   4   5   6   7   8   

This is table  5  of  8  ( 947 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1005012--1005130	42	2.8	42	92	0	193	8	46	2	42	1.47
1005045--1005120	12	6.9	11	75	15	52	9	48	2	39	1.49
1005036--1005121	24	3.8	24	72	17	85	10	45	2	41	1.51
1005027--1005097	18	3.6	18	69	20	52	9	43	2	43	1.52
1006772--1006956	79	2.3	78	85	3	237	28	23	13	34	1.93
1013789--1013843	19	2.8	20	80	5	67	32	12	12	41	1.81
1013893--1013919	13	2.1	13	100	0	54	29	14	14	40	1.86
1017703--1017737	17	2.0	17	88	5	52	57	2	2	37	1.29
1018901--1018947	9	5.3	9	75	14	53	44	0	0	55	0.99
1023918--1023974	2	27.5	2	80	7	60	45	0	5	49	1.24
1029080--1029203	48	2.6	46	78	14	135	41	4	4	50	1.43
1039898--1039955	15	3.9	14	76	10	53	51	18	12	17	1.75
1039871--1039956	31	2.7	31	83	1	100	50	19	11	18	1.77
1043430--1043482	26	2.1	25	86	10	72	35	13	3	47	1.61
1045105--1045144	16	2.5	16	87	0	53	47	7	5	40	1.54
1046138--1046162	4	6.2	4	100	0	50	52	24	0	24	1.48
1047696--1047728	3	11.0	3	100	0	66	33	0	33	33	1.58
1048123--1048179	23	2.5	24	75	18	59	59	0	0	40	0.97
1048150--1048202	21	2.5	21	76	11	63	60	0	0	39	0.97
1048189--1048235	23	2.0	23	84	8	60	55	2	0	42	1.12
1048201--1048230	15	2.0	15	93	0	51	50	0	0	50	1.00
1048428--1048487	28	2.1	29	81	3	68	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049059--1049100	15	2.8	15	82	7	50	71	4	0	23	1.05
1055242--1055306	30	2.2	29	83	8	78	41	3	0	55	1.15
1055331--1055364	14	2.7	12	83	16	50	35	0	0	64	0.94
1055860--1055909	12	4.2	12	73	16	50	54	0	2	44	1.11
1057486--1057527	17	2.5	17	84	0	57	14	2	4	78	1.01
1059228--1059270	17	2.5	17	92	0	77	30	16	6	46	1.73
1067061--1067090	13	2.3	13	94	0	51	33	13	16	36	1.88
1067156--1067207	19	2.7	20	82	8	63	42	13	15	28	1.85
1067596--1067622	11	2.5	11	100	0	54	59	0	0	40	0.98
1067929--1068077	74	2.0	72	90	2	235	34	4	6	53	1.48
1068186--1068229	3	14.7	3	95	0	79	63	0	2	34	1.07
1068228--1068264	3	12.3	3	100	0	74	32	0	32	35	1.58
1068357--1068460	53	2.0	53	90	0	163	31	8	25	34	1.86
1078614--1078666	19	2.7	20	88	2	81	37	15	15	32	1.88
1079220--1079262	22	2.0	20	86	8	59	39	16	4	39	1.69
1080759--1080808	21	2.4	21	83	9	59	48	0	20	32	1.50
1080766--1080808	21	2.0	22	86	4	61	51	0	20	27	1.48
1085488--1085524	3	12.3	3	94	0	65	29	35	0	35	1.58
1086944--1086968	13	1.9	13	100	0	50	32	16	16	36	1.90
1089103--1089237	50	2.7	49	90	2	198	27	17	14	40	1.88
1091613--1091981	163	2.3	159	80	10	428	26	23	13	36	1.92
1091633--1091991	80	4.5	79	79	8	393	26	24	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093129--1093170	14	3.0	14	79	6	50	26	9	0	64	1.24
1094585--1094870	156	1.8	156	82	6	375	27	10	19	41	1.84
1097812--1097879	24	2.8	25	73	20	72	57	1	0	41	1.08
1097807--1097879	25	3.1	22	75	17	67	54	1	0	43	1.08
1100309--1100397	16	5.1	17	71	24	53	52	0	2	44	1.13
1100359--1100401	16	2.6	17	78	17	54	60	0	0	39	0.97
1100788--1100850	16	3.8	17	74	18	60	46	0	0	53	1.00
1100786--1100840	13	3.4	16	72	27	53	45	0	0	54	0.99
1100853--1100911	16	3.8	16	77	4	66	32	0	0	67	0.91
1100859--1100922	13	4.6	14	73	9	51	32	0	0	67	0.91
1102284--1102654	185	2.0	186	98	0	717	32	10	13	43	1.79
1103719--1103769	21	2.7	19	76	14	52	37	5	0	56	1.23
1103822--1103892	37	1.9	37	94	0	124	61	2	9	25	1.40
1104007--1104037	16	2.0	16	93	6	55	29	12	6	51	1.65
1104403--1104460	29	2.0	30	86	3	82	18	27	13	39	1.89
1106377--1106430	4	12.8	4	77	11	54	72	0	25	1	0.95
1110678--1110998	160	2.0	160	92	1	536	42	5	9	42	1.61
1111228--1111744	257	2.0	259	94	1	914	32	19	19	29	1.96
1116361--1116391	2	15.5	2	100	0	62	51	0	0	48	1.00
1119568--1119630	31	2.0	31	100	0	126	28	3	9	58	1.45
1123910--1123957	24	2.0	25	83	4	62	72	4	2	20	1.11
1124366--1124413	23	2.0	24	84	4	62	20	8	4	66	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126735--1126769	3	12.0	3	93	6	63	68	0	0	31	0.90
1127146--1127684	154	3.5	155	79	6	561	23	16	20	39	1.92
1130752--1130784	13	2.5	13	95	0	57	36	6	39	18	1.75
1130864--1130938	27	2.8	27	89	0	114	46	22	6	24	1.75
1135329--1135362	13	2.6	13	95	0	59	32	8	44	14	1.76
1136489--1136532	22	2.0	22	95	0	79	50	6	4	38	1.50
1136655--1136710	27	2.1	27	93	0	94	39	7	12	41	1.70
1137644--1137709	19	3.8	19	77	22	90	33	12	18	36	1.88
1137645--1137707	32	2.0	32	100	0	126	33	12	19	34	1.89
1137664--1137688	13	1.9	13	100	0	50	36	16	16	32	1.90
1139969--1140017	27	1.9	27	84	12	68	28	36	16	18	1.92
1151711--1151830	1	120.0	1	70	0	78	85	9	5	0	0.75
1151714--1151824	34	3.2	34	83	6	143	84	9	6	0	0.77
1151713--1151828	36	3.3	35	80	15	132	84	9	6	0	0.77
1153261--1153494	28	8.1	28	89	3	333	32	33	16	17	1.92
1153267--1153526	88	3.0	88	93	2	427	32	33	16	18	1.93
1153261--1153494	58	4.1	57	89	4	337	32	33	16	17	1.92
1153500--1153596	34	2.9	34	90	3	151	20	31	11	36	1.88
1153495--1153622	34	3.7	34	85	3	132	19	31	14	35	1.91
1153629--1153720	43	2.1	43	85	0	121	23	23	19	32	1.97
1153725--1153968	47	4.9	48	74	11	186	22	27	16	32	1.96
1153675--1153989	52	6.2	52	73	9	238	23	26	16	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1153672--1154024	154	2.3	151	89	2	528	24	26	15	33	1.95
1155031--1155128	19	5.8	19	73	26	112	33	12	18	35	1.88
1155032--1155126	32	3.0	32	100	0	190	33	12	18	34	1.89
1155051--1155107	13	3.9	13	76	24	60	35	14	17	33	1.90
1155151--1155214	33	1.9	33	90	6	103	29	18	10	40	1.85
1159183--1159822	155	4.1	155	75	11	472	39	19	16	24	1.92
1159672--1160015	155	2.2	154	82	2	429	41	16	15	25	1.88
1160229--1160651	166	2.5	166	82	7	495	38	11	10	38	1.77
1161645--1161753	16	6.8	16	74	4	103	41	29	15	13	1.86
1161643--1161753	32	3.5	32	89	0	150	41	29	15	13	1.85
1162781--1162901	32	3.8	32	82	0	152	38	28	16	15	1.90
1162779--1162891	48	2.4	48	81	0	145	38	27	16	16	1.91
1162781--1162916	32	4.2	32	80	0	146	41	29	15	13	1.86
1162779--1162902	16	7.8	16	77	0	122	37	29	16	16	1.91
1164078--1164119	18	2.3	19	83	4	50	52	2	2	42	1.27
1163841--1164224	163	2.3	165	83	4	445	51	8	8	31	1.62
1167191--1167250	2	33.0	2	73	18	51	48	3	0	48	1.18
1167206--1167235	5	6.0	5	100	0	60	40	0	0	60	0.97
1167191--1167239	15	3.4	14	83	8	53	46	2	0	51	1.12
1167452--1167477	4	6.5	4	100	0	52	73	0	0	26	0.84
1168076--1168197	63	2.0	62	88	1	181	40	6	22	30	1.79
1168736--1168804	16	4.3	16	78	8	61	42	27	20	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169466--1169527	19	3.2	19	84	4	70	46	0	4	48	1.23
1169482--1169526	20	2.2	20	96	0	81	40	0	6	53	1.27
1170846--1170909	32	2.0	32	90	0	101	26	15	34	23	1.95
1170958--1171149	97	2.0	99	80	8	223	36	9	23	30	1.86
1173386--1173435	21	2.5	20	87	9	66	38	10	18	34	1.84
1173473--1173529	20	2.8	21	75	2	62	31	12	12	43	1.79
1174276--1174350	22	3.4	22	92	0	114	17	21	5	56	1.61
1177562--1177914	68	5.2	68	78	5	252	32	15	25	26	1.95
1178056--1178233	68	2.6	68	85	7	211	27	12	28	30	1.93
1178125--1178278	68	2.3	69	83	2	186	28	14	27	28	1.96

Tables:   1   2   3   4   5   6   7   8