genome.fa.s26.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold26
Parameters: 2 7 7 80 10 50 1000
Length:  1656043

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 947 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1526204--1526280	20	3.6	20	77	16	73	42	15	15	25	1.86
1528289--1528319	15	2.1	15	93	0	53	12	22	16	48	1.80
1532382--1532407	13	2.0	13	100	0	52	30	15	15	38	1.88
1532467--1532539	20	3.6	20	81	3	101	31	19	13	35	1.91
1532446--1532539	41	2.3	41	96	0	170	30	18	12	38	1.88
1532446--1532521	21	3.7	21	78	3	91	30	17	11	40	1.85
1533826--1533947	63	2.0	61	90	3	190	27	16	16	40	1.89
1536273--1536447	51	3.4	51	80	1	197	29	25	10	34	1.90
1536400--1536601	79	2.6	78	82	4	237	30	24	10	33	1.90
1536539--1536648	51	2.1	52	88	1	159	33	24	9	32	1.87
1536736--1537000	79	3.4	78	74	13	220	27	24	13	34	1.93
1549417--1549452	5	6.5	6	87	12	51	86	13	0	0	0.58
1549414--1549469	10	5.5	10	79	10	51	85	8	5	0	0.73
1549414--1549448	16	2.1	16	94	5	61	88	11	0	0	0.51
1549414--1549459	21	2.2	21	88	7	67	86	10	2	0	0.64
1549414--1549472	9	7.2	8	78	16	50	84	8	6	0	0.77
1549414--1549469	22	2.7	20	81	13	60	85	8	5	0	0.73
1550501--1550914	61	6.9	62	83	7	505	25	28	20	25	1.99
1550501--1550914	124	3.4	121	85	5	529	25	28	20	25	1.99
1551623--1551671	13	4.2	13	71	28	56	28	16	14	40	1.87
1551589--1551659	20	3.6	19	92	3	106	26	19	11	42	1.85
1554018--1554124	53	2.0	53	83	1	135	28	24	9	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1554031--1554200	50	3.3	50	79	4	180	29	26	11	32	1.91
1554133--1554746	79	7.8	79	70	13	320	28	27	12	31	1.93
1554292--1554408	51	2.3	52	87	1	182	34	29	7	29	1.85
1554393--1554465	28	2.6	27	82	10	85	23	34	17	24	1.96
1554418--1554746	158	2.1	159	81	4	378	27	26	13	31	1.94
1561176--1561248	20	3.6	20	81	3	101	35	13	19	31	1.91
1561176--1561270	41	2.3	42	96	1	174	40	12	17	29	1.87
1561309--1561334	13	2.0	13	100	0	52	38	15	15	30	1.88
1566137--1566183	21	2.2	22	82	17	64	76	2	14	6	1.08
1567142--1567190	20	2.5	19	86	3	62	28	12	16	42	1.84
1567142--1567194	19	2.7	20	88	2	72	28	11	16	43	1.83
1568879--1568913	15	2.3	15	95	0	61	42	0	28	28	1.56
1572129--1572170	20	2.0	21	90	4	68	38	11	16	33	1.86
1574703--1574729	13	2.1	13	100	0	54	29	14	14	40	1.86
1574717--1574789	19	3.8	19	89	7	112	34	16	16	32	1.91
1574714--1574789	38	2.0	39	92	7	129	34	17	15	32	1.91
1574838--1574862	13	1.9	13	100	0	50	36	16	16	32	1.90
1577402--1577448	24	2.0	24	91	0	76	42	23	12	21	1.87
1582239--1582358	49	2.4	50	84	5	156	36	15	8	39	1.78
1582353--1582495	49	2.9	49	81	7	164	25	5	18	50	1.68
1589281--1589768	140	3.5	141	85	3	637	44	8	10	36	1.70
1590658--1590703	21	2.2	21	84	7	58	4	13	2	80	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1590667--1590706	21	1.9	21	94	0	71	2	12	2	82	0.87
1590666--1590708	11	4.0	11	84	6	61	2	13	2	81	0.89
1591194--1591573	165	2.3	166	82	5	441	48	8	12	30	1.72
1591194--1591658	166	2.8	165	80	5	433	48	9	12	29	1.72
1591350--1591975	166	3.8	164	74	9	465	50	9	10	29	1.69
1593188--1593218	15	2.1	15	93	0	53	41	16	12	29	1.85
1593391--1593630	110	2.2	109	84	3	322	30	10	20	38	1.87
1593387--1593661	55	5.0	54	79	6	268	31	9	19	39	1.84
1593557--1593672	54	2.1	54	81	6	128	32	10	17	39	1.83
1594620--1594687	33	2.1	33	88	2	102	36	16	13	33	1.87
1594929--1594992	31	2.0	31	82	11	76	25	10	12	51	1.72
1598908--1598979	28	2.6	28	84	0	81	26	19	29	25	1.99
1601387--1601412	13	2.0	13	100	0	52	38	15	15	30	1.88
1601366--1601432	33	2.0	33	88	0	98	43	16	14	25	1.86
1601474--1601498	13	1.9	13	100	0	50	32	16	16	36	1.90
1604583--1604703	52	2.3	52	97	0	224	28	18	18	34	1.94
1604583--1604723	52	2.7	51	90	4	212	30	17	18	33	1.94
1604712--1604736	13	1.9	13	100	0	50	36	16	16	32	1.90
1604801--1604825	13	1.9	13	100	0	50	32	16	16	36	1.90
1604779--1604845	33	2.0	33	88	0	98	40	13	11	34	1.81
1605423--1605803	169	2.2	170	82	6	439	36	14	26	22	1.93
1605643--1606971	295	4.5	292	91	4	1970	32	16	25	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1605707--1606971	195	6.5	194	92	3	1884	32	17	25	24	1.96
1605698--1606966	490	2.6	490	96	0	2319	32	17	25	24	1.96
1606966--1607035	33	2.1	35	94	5	126	20	17	37	25	1.94
1607040--1607983	34	28.6	33	75	15	621	32	13	33	20	1.91
1607020--1607956	71	14.1	68	79	12	803	32	12	34	21	1.91
1607108--1607459	61	5.4	63	76	14	233	30	13	35	20	1.91
1607307--1607358	27	1.9	27	96	0	95	21	17	36	25	1.94
1609573--1609973	55	7.3	55	91	3	614	21	20	28	29	1.98
1609618--1609758	28	5.1	27	62	15	65	21	19	30	27	1.98
1610939--1611027	6	15.3	6	75	20	50	0	10	5	84	0.78
1610955--1611029	1	75.0	1	74	0	60	0	6	6	86	0.70
1610942--1611030	32	2.8	32	80	13	94	0	8	6	84	0.78
1610942--1611029	23	3.8	22	79	8	104	0	9	5	85	0.75
1610940--1611030	14	7.0	13	76	17	82	0	9	6	83	0.81
1614195--1614226	8	4.0	8	91	0	55	15	0	21	62	1.32
1614430--1614467	13	3.0	13	88	7	60	31	15	15	36	1.90
1615085--1615203	54	2.2	54	98	0	229	29	31	13	25	1.94
1617056--1617080	13	1.9	13	100	0	50	32	16	16	36	1.90
1617036--1617103	33	2.1	33	91	2	111	35	16	14	33	1.89
1622400--1622451	18	2.9	18	78	10	63	26	5	3	63	1.34
1622959--1622984	13	2.0	13	100	0	52	38	15	15	30	1.88
1625378--1625443	27	2.4	27	94	0	114	19	37	24	18	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1636920--1637068	39	3.8	39	73	13	126	21	13	16	48	1.79
1637000--1637405	79	5.2	78	74	8	308	27	17	13	42	1.86
1637035--1637436	39	10.3	39	70	9	178	27	18	13	40	1.88
1639370--1639446	19	3.7	22	77	19	85	36	19	0	44	1.51
1639370--1639427	23	2.6	23	86	10	84	39	18	0	41	1.51
1642871--1642896	13	2.0	13	100	0	52	38	15	15	30	1.88
1642853--1642916	33	2.0	33	90	3	103	42	17	14	26	1.87
1645704--1646256	276	2.0	276	98	0	1061	32	14	19	33	1.92
1649352--1649390	13	3.0	13	96	0	69	30	17	15	35	1.91
1649512--1649558	22	2.3	20	78	10	51	36	19	4	40	1.71
1651187--1651252	29	2.4	27	92	7	107	34	0	27	37	1.57
1651914--1651939	13	2.0	13	100	0	52	38	15	15	30	1.88
1651896--1651959	33	2.0	33	90	3	103	42	17	14	26	1.87
1654716--1654755	16	2.4	16	83	4	53	47	7	7	37	1.60
1654742--1654797	18	3.2	17	80	7	58	39	10	8	41	1.71
1654748--1654797	18	2.8	18	84	0	64	42	10	8	40	1.68
1655126--1655187	20	3.0	21	77	20	67	51	4	1	41	1.33
1655126--1655189	22	3.0	23	78	19	75	51	4	1	42	1.32
1655579--1655985	198	2.0	201	88	3	597	41	8	6	43	1.60

Tables:   1   2   3   4   5   6   7   8

The End!