genome.fa.s260.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold260
Parameters: 2 7 7 80 10 50 1000
Length:  1006324

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 769 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639040--639081	22	1.9	22	90	9	68	33	0	14	52	1.42
643169--643204	3	11.7	3	88	5	54	61	2	0	36	1.11
646621--646645	9	2.8	9	100	0	50	72	0	8	20	1.10
646745--646805	17	3.5	18	78	14	65	52	0	3	44	1.17
646758--646827	17	4.3	16	75	15	72	57	0	1	41	1.08
647892--647918	3	9.0	3	100	0	54	33	0	0	66	0.92
649312--649384	23	3.2	23	75	11	60	43	0	0	56	0.99
650201--650262	22	2.9	22	83	9	76	53	0	1	45	1.10
651282--651357	31	2.3	32	82	8	91	52	0	2	44	1.14
651336--651403	22	3.0	22	76	6	66	57	0	0	42	0.98
651370--651412	15	2.6	17	82	10	54	65	0	0	34	0.93
651825--651871	18	2.4	20	79	10	53	46	0	0	53	1.00
651857--651906	21	2.3	21	80	13	57	54	0	0	46	1.00
653431--653466	18	2.0	18	89	10	56	61	0	0	38	0.96
656060--656103	20	2.2	20	84	8	54	56	0	0	43	0.99
656321--656383	29	2.2	28	83	8	74	46	6	3	44	1.45
656828--656892	33	2.0	33	93	0	112	40	4	3	52	1.38
660480--660770	52	5.6	52	85	3	338	35	17	24	22	1.96
660850--661042	32	6.2	32	77	11	172	21	16	30	31	1.96
660844--661060	32	7.1	30	80	10	158	22	17	29	29	1.97
660844--661050	62	3.4	62	78	12	187	21	17	29	30	1.97
660887--661076	28	6.4	28	78	13	121	20	16	31	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662395--662436	19	2.3	18	88	8	66	9	0	2	88	0.61
662395--662428	12	2.9	12	91	4	52	8	0	2	88	0.62
667094--667118	13	1.9	13	100	0	50	36	16	16	32	1.90
667159--667225	33	2.0	33	88	0	98	40	13	11	34	1.81
667181--667205	13	1.9	13	100	0	50	32	16	16	36	1.90
680164--680218	20	2.7	20	71	2	56	30	12	14	41	1.83
682073--682122	20	2.8	17	85	11	64	54	2	0	44	1.11
682242--682308	34	1.9	35	82	8	84	50	0	0	49	1.00
682877--682941	33	2.0	33	87	0	94	38	1	4	55	1.30
689417--689465	19	2.5	20	86	3	64	2	24	0	73	0.94
689417--689483	16	4.3	15	79	7	71	1	22	0	76	0.87
689424--689483	4	15.5	4	78	13	63	1	23	0	75	0.90
690054--690345	150	1.9	151	89	2	453	24	20	18	36	1.95
695745--695779	15	2.3	16	85	14	56	40	2	17	40	1.64
696207--696240	13	2.5	13	95	4	59	38	0	0	61	0.96
696507--696545	19	2.1	19	90	0	60	61	0	0	38	0.96
696588--696659	34	2.3	30	80	15	83	51	1	0	47	1.09
696584--696650	34	2.1	33	86	8	93	52	0	0	47	1.00
696590--696672	34	2.4	34	80	7	80	51	2	1	44	1.22
697037--697098	27	2.2	29	80	8	76	64	0	1	33	1.03
697488--697533	22	2.1	22	83	0	56	47	0	0	52	1.00
697628--697680	14	4.1	14	74	16	60	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699388--699443	17	3.4	17	73	24	57	58	1	0	39	1.08
699397--699447	18	2.7	19	76	14	52	56	1	0	41	1.10
702269--702299	15	2.1	14	94	5	53	51	0	0	48	1.00
703447--703494	19	2.5	20	86	10	73	41	14	14	29	1.85
703592--703636	24	1.9	24	90	4	74	33	8	11	46	1.70
705095--705132	20	1.9	20	94	0	67	39	10	10	39	1.74
707219--707268	21	2.3	23	83	13	70	62	2	20	16	1.43
707258--707296	21	2.0	19	85	14	53	74	0	5	20	1.01
709168--709296	58	2.2	58	98	0	249	39	2	29	28	1.69
710180--710287	52	2.1	52	87	0	153	37	15	14	32	1.89
710708--710836	34	3.8	35	80	11	146	34	11	23	31	1.90
711236--711266	5	6.2	5	100	0	62	19	0	0	80	0.71
715442--715657	115	1.9	114	89	0	333	47	10	11	30	1.73
721759--721821	13	5.1	12	74	14	56	50	0	0	49	1.00
721759--721820	24	2.5	25	84	10	74	50	0	0	50	1.00
721808--721888	34	2.4	34	89	0	126	50	4	0	44	1.23
727255--727322	22	3.0	22	76	18	75	36	20	13	29	1.91
733026--733074	19	2.6	19	87	6	64	32	0	0	67	0.91
735321--735517	100	2.0	99	85	6	265	29	14	26	28	1.95
736028--736223	53	3.7	53	86	2	261	29	15	29	25	1.96
736124--736208	27	3.2	27	65	9	75	27	14	34	24	1.94
736140--736224	26	3.2	26	67	9	82	28	15	30	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736031--736276	53	4.7	52	81	4	183	28	16	28	26	1.97
736075--736275	106	1.9	106	83	0	258	28	16	28	25	1.97
741442--741485	23	1.9	23	86	9	63	56	0	2	40	1.11
742643--742679	18	2.1	18	94	0	65	45	0	0	54	1.00
742833--742891	16	3.7	16	77	8	66	54	5	0	40	1.23
742908--742947	21	1.9	21	85	10	55	62	17	0	20	1.33
743129--743413	144	2.0	144	91	1	464	21	26	18	33	1.96
745551--745587	3	12.7	3	94	5	67	64	0	0	35	0.94
745617--745660	17	2.4	18	79	20	56	38	0	0	61	0.96
753324--753348	13	1.9	13	100	0	50	36	16	16	32	1.90
753399--753447	13	4.2	13	71	28	56	30	12	18	38	1.87
757620--757651	16	2.0	17	88	11	50	53	12	18	15	1.73
759734--759758	13	1.9	13	100	0	50	32	20	16	32	1.94
762241--762267	13	2.1	13	100	0	54	29	14	14	40	1.86
762222--762286	33	2.0	32	87	3	94	30	15	13	40	1.86
762251--762306	19	2.9	19	84	10	78	35	16	14	33	1.88
762357--762382	13	2.0	13	100	0	52	30	15	15	38	1.88
766060--766106	18	2.6	18	89	3	67	48	4	4	42	1.42
771609--772034	213	2.0	212	96	0	791	31	23	14	30	1.94
778457--778514	17	3.5	17	76	9	57	34	3	0	62	1.12
778530--778577	16	2.9	16	78	6	51	27	4	0	68	1.07
778967--779020	26	2.1	27	82	6	67	50	0	1	48	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
779602--779634	16	2.1	16	88	11	50	36	0	3	60	1.12
779918--779960	20	2.1	21	83	12	54	60	0	0	39	0.97
779963--780014	23	2.3	23	86	6	70	42	1	1	53	1.23
781363--781607	128	1.9	128	94	3	431	47	6	8	37	1.60
782476--782546	37	1.9	36	86	8	99	40	7	5	46	1.54
783423--783468	21	2.1	22	88	4	67	21	2	15	60	1.45
785704--785794	10	9.0	10	74	18	82	31	2	2	63	1.18
785704--785779	15	4.9	15	71	10	64	32	2	1	63	1.17
785707--785805	40	2.5	40	96	1	180	31	2	2	64	1.16
785705--785791	15	5.7	14	69	18	50	32	2	2	63	1.19
789255--789320	31	2.1	31	86	5	89	63	0	3	33	1.10
789337--789393	17	3.5	17	67	23	50	50	1	1	45	1.22
789379--789425	21	2.2	20	82	14	51	63	2	0	34	1.06
789316--789434	15	7.5	15	66	25	59	59	1	0	37	1.13
790127--790173	14	3.7	13	76	23	55	23	8	0	68	1.17
790127--790180	24	2.2	24	96	0	99	22	7	0	70	1.12
790776--790806	4	7.8	4	100	0	62	25	0	0	74	0.82
791523--791583	23	2.7	23	78	14	65	57	0	0	42	0.98
791952--792056	54	1.9	54	84	3	140	39	8	5	46	1.58
792119--792145	2	13.5	2	100	0	54	51	0	0	48	1.00
792391--792450	22	2.9	21	78	7	68	58	0	1	40	1.08
797792--797824	16	2.1	16	88	11	50	36	0	3	60	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798153--798204	23	2.3	23	80	6	61	42	3	1	51	1.31
799554--799799	129	1.9	128	92	0	395	45	6	8	39	1.61
803941--804032	15	6.0	15	73	13	80	31	2	2	64	1.18
803944--804043	40	2.5	40	93	3	164	31	2	2	65	1.15
803941--804032	10	9.0	10	73	17	73	31	2	2	64	1.18
807507--807585	10	7.4	11	76	12	60	65	0	2	31	1.06
807590--807646	17	3.5	17	67	23	50	50	1	1	45	1.22
807632--807678	21	2.2	20	82	14	51	63	2	0	34	1.06
808546--808618	38	1.9	38	81	10	87	47	1	1	49	1.18
809148--809217	29	2.4	30	80	7	81	48	1	4	45	1.30

Tables:   1   2   3   4   5   6   7