Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold260
Parameters: 2 7 7 80 10 50 1000
Length:  1006324

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 769 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
944722--944783
14
4.6
14
71
28
53
61
4
1
32
1.27
944735--944768
16
2.2
15
89
5
50
67
2
0
29
1.05
944725--944783
12
4.9
12
80
14
50
61
5
1
32
1.28
945330--945387
18
2.8
20
77
17
57
34
0
0
65
0.93
945324--945376
18
3.0
18
83
2
63
33
0
0
66
0.92
945360--945407
15
3.3
14
75
18
53
43
0
0
56
0.99
946583--946614
3
11.0
3
93
6
57
31
0
0
68
0.90
946795--946837
22
2.0
22
85
0
59
32
0
13
53
1.41
947752--947788
2
19.0
2
88
5
58
48
0
0
51
1.00
949760--949824
26
2.4
28
78
19
75
40
1
0
58
1.07
949783--949830
12
3.4
15
78
21
59
41
0
0
58
0.98
956699--956745
16
2.9
16
75
12
51
46
6
2
44
1.40
957871--957924
27
2.0
27
89
7
83
61
7
1
29
1.34
957889--957932
12
3.6
12
81
3
52
68
4
0
27
1.09
962870--962908
20
2.0
20
89
0
60
53
17
5
23
1.63
963067--963111
21
2.2
20
84
4
54
0
11
35
53
1.37
963190--963235
24
2.0
23
83
12
58
2
13
10
73
1.17
963508--963556
20
2.5
20
86
0
71
53
10
2
34
1.47
963508--963554
18
2.6
18
82
0
58
53
10
2
34
1.48
964133--964170
20
1.9
20
88
0
58
39
5
7
47
1.55
965313--965360
24
2.0
24
88
8
71
27
2
2
68
1.11
969004--969058
25
2.2
26
90
3
85
40
16
21
21
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
969624--969727
49
2.1
49
81
13
117
40
1
0
57
1.10
969668--969772
37
3.0
36
81
13
105
40
2
1
55
1.26
969658--969762
16
6.1
17
70
19
67
40
1
1
56
1.21
971416--971440
13
1.9
13
100
0
50
32
16
16
36
1.90
971494--971572
42
1.9
41
86
2
113
30
11
16
41
1.83
973634--973692
21
2.8
21
89
0
82
62
0
20
16
1.32
976233--976265
15
2.2
15
100
0
66
60
0
30
9
1.27
976899--976942
22
2.0
21
83
12
54
50
6
9
34
1.61
977114--977148
10
3.5
10
100
0
70
20
31
8
40
1.82
977142--977227
42
2.1
41
88
2
127
33
13
13
38
1.85
978409--978443
3
11.7
3
100
0
70
68
31
0
0
0.90
978442--978477
3
12.0
3
100
0
72
66
0
0
33
0.92
978861--978894
9
3.8
9
88
11
52
50
5
0
44
1.26
979114--979175
30
2.0
31
84
9
81
40
0
1
58
1.08
979367--979426
26
2.3
27
82
8
79
43
8
20
28
1.80
981611--981656
10
4.6
10
80
17
51
60
0
0
39
0.97
981613--981656
20
2.2
20
88
8
63
59
0
0
40
0.98
983968--984017
24
2.1
24
100
0
100
48
8
24
20
1.76
984928--984965
3
12.7
3
100
0
76
65
0
0
34
0.93
985695--985724
15
2.0
15
93
0
51
26
6
16
50
1.70
986564--986595
15
2.1
15
94
0
55
50
21
0
28
1.49
987078--987120
15
2.9
15
82
6
52
79
0
16
4
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
988326--988369
20
2.2
20
95
0
79
27
0
6
65
1.17
988398--988440
16
2.7
15
82
10
50
34
0
2
62
1.08
989445--989500
22
2.9
18
75
19
51
62
1
3
32
1.23
1000735--1000780
24
2.0
23
83
12
58
2
13
10
73
1.17
1001286--1001404
35
3.4
35
89
0
184
15
21
13
49
1.79

Tables:   1   2   3   4   5   6   7

The End!