genome.fa.s263.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold263
Parameters: 2 7 7 80 10 50 1000
Length:  1338270

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1281940--1282034	33	2.9	32	80	3	109	15	15	42	26	1.87
1282240--1282498	50	5.2	50	90	0	383	28	18	22	30	1.97
1286891--1286999	50	2.2	50	89	0	164	30	19	20	30	1.97
1288800--1288911	55	2.0	55	85	0	152	50	8	4	36	1.52
1289272--1289329	23	2.6	23	81	13	75	37	1	0	60	1.07
1290089--1290151	32	2.0	32	81	6	74	50	4	3	41	1.39
1292732--1292801	21	3.7	20	66	23	60	55	1	0	42	1.08
1293576--1293622	18	2.7	18	74	6	53	57	2	6	34	1.36
1294444--1294499	29	1.9	29	88	0	85	39	3	5	51	1.42
1294595--1294696	50	2.0	50	98	0	195	50	7	1	39	1.42
1294835--1294870	17	2.1	18	89	5	56	38	0	5	55	1.23
1294912--1294972	17	3.5	17	80	10	70	70	1	1	26	1.06
1295707--1295780	23	3.2	24	79	9	75	64	10	2	21	1.37
1296168--1296224	22	2.7	21	84	15	73	68	1	0	29	1.00
1296743--1296817	33	2.3	33	83	0	87	14	21	38	25	1.91
1296827--1296913	27	3.2	27	90	0	129	13	11	41	33	1.81
1296929--1297023	33	2.9	32	84	3	118	16	15	42	25	1.88
1298891--1298944	20	2.6	21	80	13	60	53	0	1	44	1.11
1299802--1299847	23	2.1	21	84	8	56	56	0	0	43	0.99
1300070--1300102	2	16.5	2	100	0	66	51	0	0	48	1.00
1305419--1305447	10	2.7	11	89	10	51	51	0	0	48	1.00
1305407--1305447	21	2.1	19	86	9	55	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1305891--1305920	15	2.0	15	93	0	51	23	3	0	73	0.98
1305899--1305938	17	2.2	18	86	13	55	22	0	0	77	0.77
1309415--1309443	2	14.5	2	100	0	58	48	0	0	51	1.00
1311129--1311335	114	1.8	113	82	5	265	34	14	8	42	1.76
1313010--1313053	20	2.2	20	84	12	54	52	2	0	45	1.13
1314071--1314099	2	14.5	2	100	0	58	48	0	0	51	1.00
1315870--1315906	2	18.5	2	100	0	74	51	0	0	48	1.00
1317564--1317946	191	2.0	192	89	0	579	46	14	13	26	1.80
1321001--1321059	26	2.3	26	82	5	75	49	0	1	49	1.11
1321096--1321128	17	2.0	17	88	5	50	45	0	0	54	0.99
1321092--1321152	31	1.9	31	83	9	79	49	0	0	50	1.00
1321134--1321180	25	1.9	25	86	4	69	38	0	0	61	0.96
1321396--1321472	32	2.4	32	80	4	84	57	0	1	41	1.07
1321440--1321493	18	2.9	19	75	22	53	48	0	0	51	1.00
1321482--1321525	15	2.8	15	89	6	61	65	0	0	34	0.93
1321889--1321940	17	2.8	18	77	19	54	57	0	0	42	0.98
1325826--1325880	16	3.7	16	72	13	55	56	0	0	43	0.99
1325857--1325893	17	2.1	18	85	14	51	72	0	0	27	0.84
1326439--1326501	22	2.9	22	77	11	67	58	1	1	38	1.17
1326451--1326527	27	2.8	27	79	16	86	61	5	2	31	1.32
1329033--1329057	2	12.5	2	100	0	50	48	0	0	52	1.00
1329524--1329587	24	2.6	24	80	5	74	57	0	3	39	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1332132--1332177	8	5.2	9	78	21	53	39	0	0	60	0.97
1332130--1332185	16	3.2	19	85	12	75	39	0	0	60	0.97
1332193--1332225	17	2.0	17	88	5	50	45	0	0	54	0.99
1332485--1332607	10	12.0	11	66	18	52	60	0	0	39	1.03
1332499--1332576	16	4.6	16	67	17	50	61	0	0	38	0.96
1332460--1332564	27	4.0	28	75	13	91	61	0	0	37	1.02
1332950--1333000	17	2.9	17	78	18	52	58	0	0	41	0.98
1333930--1334089	50	3.2	50	86	0	212	28	15	18	37	1.91
1338034--1338108	20	3.8	20	80	3	80	41	12	12	34	1.79
1338031--1338108	40	2.0	39	84	2	102	41	12	11	34	1.80

Tables:   1   2   3   4   5   6   7   8   9   10

The End!