genome.fa.s263.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold263
Parameters: 2 7 7 80 10 50 1000
Length:  1338270

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386251--386276	13	2.0	13	100	0	52	69	0	0	30	0.89
386380--386413	16	2.1	17	88	5	52	58	0	2	38	1.13
386694--386728	14	2.6	14	90	4	54	74	2	0	22	0.95
386683--386780	11	9.6	10	69	22	53	65	2	0	32	1.04
386777--386812	18	1.9	19	88	5	56	50	0	0	50	1.00
386768--386815	25	2.0	24	91	4	78	47	0	0	52	1.00
387173--387262	30	3.0	30	83	3	110	40	3	1	55	1.24
387413--387469	29	1.9	29	82	3	69	38	8	3	49	1.51
387444--387492	17	3.0	17	72	16	50	40	6	0	53	1.26
387839--387876	8	4.3	9	90	9	53	78	0	0	21	0.74
387838--387877	5	8.8	5	94	5	52	80	0	0	20	0.72
389674--389699	4	6.5	4	100	0	52	26	0	0	73	0.84
390584--390618	18	1.9	18	88	0	52	37	0	2	60	1.12
391019--391084	32	2.0	33	82	2	80	51	3	3	42	1.32
391041--391115	28	2.7	27	83	8	80	53	2	1	42	1.23
394857--394900	21	2.0	22	83	12	56	54	4	0	40	1.21
395614--395670	19	3.2	19	63	27	52	43	7	12	36	1.69
396068--396132	19	3.5	19	74	15	64	41	0	1	56	1.08
396068--396146	39	2.0	40	85	7	108	43	0	1	55	1.07
399288--399330	19	2.4	19	84	7	54	32	0	4	62	1.15
399966--400046	16	5.2	16	77	18	66	60	0	1	38	1.05
399976--400052	28	2.6	29	82	13	79	61	0	1	37	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400004--400056	18	2.9	18	83	16	65	64	0	0	35	0.94
400006--400056	20	2.7	21	77	22	67	64	0	0	35	0.94
399975--400057	17	5.2	16	72	24	61	61	0	1	37	1.04
400548--400589	17	2.4	18	81	18	54	57	0	0	42	0.99
400549--400594	14	3.1	15	78	15	51	63	0	0	36	0.95
414027--414099	29	2.5	30	84	10	89	56	0	0	43	0.99
416204--416228	12	2.1	12	100	0	50	56	8	20	16	1.65
416688--416752	32	2.0	32	90	0	103	30	16	9	43	1.80
419594--419634	21	2.0	21	85	0	55	7	21	0	70	1.11
423773--423852	37	2.2	37	82	8	101	56	2	1	40	1.21
431527--431558	2	16.0	2	100	0	64	50	0	0	50	1.00
442039--442078	14	2.6	15	88	11	55	2	20	0	77	0.88
451775--451851	40	1.9	40	81	5	93	58	0	0	41	0.98
451793--451839	19	2.7	17	75	15	51	61	0	0	38	0.96
454089--454139	2	25.5	2	100	0	102	0	0	49	50	1.00
457211--457292	32	2.6	31	82	7	85	54	0	2	42	1.13
457244--457313	15	4.4	17	69	16	51	52	0	1	45	1.09
457386--457422	4	9.2	4	100	0	74	24	0	0	75	0.80
458251--458275	2	12.5	2	100	0	50	0	48	0	52	1.00
459746--459776	16	1.9	16	100	0	62	38	32	0	29	1.57
459812--459857	21	2.2	21	96	0	83	52	4	6	36	1.47
460760--460797	2	19.0	2	100	0	76	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461522--461546	2	12.5	2	100	0	50	52	0	48	0	1.00
466282--466881	150	4.0	151	91	2	912	42	19	9	29	1.82
467679--467743	33	2.0	32	82	8	78	46	0	4	49	1.22
468394--468428	5	6.8	5	87	6	52	40	2	0	57	1.14
468388--468426	16	2.4	16	91	0	60	46	2	0	51	1.14
468831--468896	27	2.4	26	76	16	62	28	0	9	62	1.26
468881--468914	17	2.0	17	88	0	50	47	0	2	50	1.16
470056--470113	21	2.7	21	79	12	64	44	0	1	53	1.10
470621--470673	21	2.5	20	81	6	52	45	3	0	50	1.19
472764--472793	6	5.0	6	95	0	51	30	3	16	50	1.62
472761--472819	18	3.3	18	78	0	64	38	5	10	45	1.60
474423--474471	19	2.4	20	80	10	55	46	2	0	51	1.12
474585--474636	27	1.9	27	88	7	79	50	0	0	50	1.00
477330--477500	91	1.9	91	90	0	270	28	14	16	40	1.88
481219--481316	20	4.9	21	69	22	59	42	1	0	56	1.06
481246--481316	30	2.4	29	83	6	88	42	1	0	56	1.08
484803--484962	40	4.0	40	95	0	275	29	21	26	21	1.99
487612--487772	79	2.0	79	96	0	295	36	16	14	32	1.89
491799--491894	32	3.0	32	83	6	122	53	6	4	36	1.46
491788--491902	32	3.6	31	81	9	108	53	6	3	37	1.43
492436--492484	22	2.4	19	80	12	53	36	2	2	59	1.21
492782--492849	26	2.6	26	97	0	127	27	2	5	63	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493225--493259	2	17.5	2	100	0	70	0	48	0	51	1.00
493259--493283	2	12.5	2	100	0	50	48	0	0	52	1.00
496647--496679	14	2.2	16	89	10	52	75	6	6	12	1.16
508315--508371	12	5.0	12	77	12	57	24	42	12	21	1.87
508295--508374	33	2.4	32	73	20	83	25	38	12	23	1.90
508327--508377	21	2.4	21	90	0	75	23	39	13	23	1.91
508934--508972	6	6.5	6	87	0	51	25	38	17	17	1.92
508981--509059	12	6.8	12	84	7	110	40	31	0	27	1.57
510359--510393	2	17.5	2	100	0	70	48	0	0	51	1.00
511150--511195	19	2.5	19	85	3	58	58	6	0	34	1.24
513713--513769	21	2.7	21	78	8	53	56	1	0	42	1.10
515037--515084	18	2.6	18	83	12	62	56	0	0	43	0.99
515401--515457	6	8.8	6	81	14	53	45	0	0	54	0.99
515857--515906	14	3.2	16	75	13	59	64	0	2	34	1.05
516144--516173	15	1.9	16	93	6	53	73	6	6	13	1.24
516822--516890	23	3.0	23	72	15	63	47	5	1	44	1.35
517949--517992	18	2.4	18	84	0	52	68	2	2	27	1.14
523697--523731	17	2.1	17	94	0	61	62	2	0	34	1.10
523841--523897	30	1.9	29	92	3	96	52	7	10	29	1.62
523843--523910	30	2.4	29	85	9	88	51	8	7	32	1.61
528743--528774	14	2.2	15	94	5	57	40	0	0	59	0.97
528896--528953	29	1.9	31	86	6	84	36	0	3	60	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528896--528940	14	3.1	14	80	3	54	31	0	4	64	1.13
529633--529699	32	2.1	32	100	0	134	32	13	2	50	1.56
530837--530881	15	3.0	15	87	9	65	48	0	0	51	1.00
530644--531349	204	3.5	197	74	9	551	38	9	7	45	1.65
535044--535121	19	4.2	18	74	19	63	37	1	0	61	1.04
535087--535121	18	1.9	18	88	11	54	40	0	0	60	0.97
535149--535203	28	2.1	24	83	12	65	41	0	0	58	0.98
535387--535427	17	2.4	18	84	8	50	46	0	0	53	1.00
535420--535453	14	2.4	14	85	0	50	50	0	0	50	1.00
536354--536409	11	4.7	12	80	20	64	53	0	0	46	1.00
536336--536409	24	3.1	23	79	14	62	51	0	0	48	1.00
536690--536723	6	5.3	6	93	6	50	38	0	0	61	0.96
536691--536724	7	5.1	7	89	10	54	41	0	0	58	0.98
536691--536724	13	2.6	14	90	9	54	41	0	0	58	0.98
536733--536774	22	1.9	22	85	9	59	30	2	2	64	1.19
540087--540138	16	3.1	17	78	15	54	63	1	0	34	1.06
541690--541757	15	4.2	16	72	23	63	54	0	2	42	1.15
542566--542638	22	3.2	21	79	14	74	65	1	1	31	1.09
542565--542623	11	5.7	11	74	22	65	66	0	0	33	0.92
542653--542707	15	3.5	15	79	13	65	60	1	0	38	1.08
542651--542699	18	2.8	18	76	14	57	57	2	0	40	1.10
542641--542728	33	2.8	32	76	17	87	57	1	0	40	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542690--542731	19	2.2	20	91	4	68	57	0	0	42	0.99
543552--543617	25	2.5	24	79	13	69	48	0	1	50	1.10
543571--543615	13	3.5	13	75	6	56	51	0	0	48	1.00
546256--546293	19	2.1	18	95	5	67	31	0	2	65	1.06
546551--546601	17	2.9	17	73	18	50	58	0	0	41	0.98
546802--546838	17	2.2	16	90	4	56	51	2	0	45	1.15
546864--546904	15	2.7	15	84	0	55	48	2	0	48	1.14
547634--547677	19	2.3	19	80	7	54	54	0	0	45	0.99
547956--548004	20	2.5	19	80	6	53	59	2	0	38	1.09
547959--548006	11	4.6	11	78	21	50	56	2	0	41	1.11

Tables:   1   2   3   4   5   6   7   8   9   10