genome.fa.s263.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold263
Parameters: 2 7 7 80 10 50 1000
Length:  1338270

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  7  of  10  ( 1134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
899201--899328	54	2.4	54	85	6	158	46	23	9	21	1.80
899223--899328	54	2.0	54	92	0	176	45	23	9	21	1.81
904059--904098	2	20.0	2	100	0	80	50	0	0	50	1.00
904583--904635	23	2.3	23	80	3	72	50	0	1	47	1.12
906375--906406	2	16.0	2	100	0	64	0	50	0	50	1.00
906670--906792	61	2.0	61	96	3	230	27	9	9	52	1.65
909687--909734	13	3.7	13	82	0	69	56	0	0	43	0.99
912549--912615	24	2.8	25	71	15	59	43	0	0	56	0.99
913060--913085	7	3.7	7	100	0	52	53	0	0	46	1.00
915950--916001	19	2.8	19	85	2	70	38	1	3	55	1.29
915987--916040	16	3.7	15	74	16	51	40	0	0	59	0.98
917483--917515	13	2.5	14	90	9	52	42	0	0	57	0.98
918350--918414	26	2.6	25	85	7	87	44	23	7	24	1.79
918365--918415	26	2.0	26	96	0	93	45	23	7	23	1.79
924137--924166	2	15.0	2	92	0	51	46	0	3	50	1.18
924303--924390	9	9.1	10	71	18	62	70	2	0	27	0.99
924309--924398	41	2.2	43	82	15	118	72	2	0	25	0.96
924303--924399	50	2.0	48	88	8	142	71	2	0	26	0.97
924461--924537	14	5.6	14	64	14	52	64	3	0	31	1.11
924460--924575	43	2.8	40	80	14	112	62	3	0	33	1.12
924561--924620	30	2.0	31	93	3	104	73	0	1	25	0.93
924570--924612	22	2.0	22	86	9	61	74	0	2	23	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
924552--924626	9	9.2	8	77	15	66	70	0	1	28	0.95
924643--924865	19	12.2	19	65	20	68	29	1	3	65	1.16
924737--924774	17	2.4	17	86	8	53	31	0	2	65	1.06
924753--924834	10	8.4	10	69	14	55	28	0	2	69	1.01
924808--924859	24	2.2	24	86	6	70	21	1	0	76	0.87
924752--924865	29	4.0	29	76	20	107	27	0	2	69	1.08
927867--927913	26	1.9	23	87	12	67	48	0	0	51	1.00
928140--928266	66	1.9	66	91	0	209	35	5	15	43	1.70
929859--929935	29	2.5	31	83	10	95	45	0	0	54	0.99
930873--930905	17	1.9	17	100	0	66	36	0	15	48	1.45
933154--933197	13	3.4	13	90	0	70	36	6	36	20	1.79
933263--933311	24	2.0	24	84	0	62	48	14	10	26	1.75
933285--933358	27	2.7	27	82	0	94	47	16	10	25	1.79
935263--935306	17	2.4	18	81	11	54	36	2	2	59	1.23
942077--942147	2	36.5	2	84	5	83	52	2	2	42	1.31
942105--942162	28	2.1	28	96	0	107	53	5	6	34	1.50
943010--943154	20	6.7	20	75	16	101	31	13	12	42	1.82
942982--943154	91	1.9	91	91	2	285	30	15	12	42	1.83
947686--947719	15	2.1	17	89	10	54	44	2	0	52	1.16
948829--948871	15	2.9	15	85	0	59	53	0	0	46	1.00
949240--949302	17	3.7	17	100	0	126	61	0	0	38	0.96
949206--949264	25	2.3	27	82	5	77	55	0	5	38	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
949231--949302	34	2.1	36	94	5	130	62	0	0	37	0.95
949715--949745	14	2.2	14	94	0	53	41	0	0	58	0.98
950774--950830	27	2.1	27	100	0	114	36	10	35	17	1.84
951181--951213	16	2.1	16	94	0	57	60	0	0	39	0.97
953187--953350	81	2.0	81	93	0	283	27	18	17	35	1.94
953384--953418	6	6.0	6	93	6	63	34	0	0	65	0.93
953384--953417	11	3.0	11	95	4	59	35	0	0	64	0.94
953956--953990	15	2.2	17	90	10	56	60	0	0	40	0.97
954347--954372	3	8.7	3	100	0	52	69	0	0	30	0.89
956316--956467	74	2.1	74	98	0	295	30	9	13	47	1.73
959558--959589	16	2.0	16	100	0	64	18	25	12	43	1.85
960843--960902	11	4.8	12	74	22	61	66	0	1	31	1.01
960866--960901	16	2.2	16	90	0	54	63	0	0	36	0.94
960871--960921	22	2.4	22	80	12	61	62	0	1	35	1.06
960840--960921	38	2.1	38	85	14	107	64	0	2	32	1.07
961597--961629	13	2.6	13	90	4	50	75	0	0	24	0.80
961771--961808	2	19.0	2	94	0	67	47	0	2	50	1.15
963484--963529	17	2.6	19	76	16	53	54	4	0	41	1.20
965474--965513	15	2.6	15	80	4	53	70	0	0	30	0.88
965529--965605	27	2.9	27	82	3	93	55	0	0	44	0.99
966038--966072	17	2.1	17	88	0	52	71	2	5	20	1.19
966765--966817	21	2.5	20	79	8	52	45	1	0	52	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
966790--966837	12	4.1	11	77	15	51	35	0	0	64	0.94
966834--966888	27	2.0	27	86	6	76	49	3	0	47	1.19
967360--967403	16	2.7	17	82	6	56	36	0	2	61	1.09
967363--967423	20	3.0	20	72	11	61	34	0	1	63	1.04
967379--967491	25	4.3	25	70	19	79	36	0	0	62	1.01
967461--967498	17	2.2	17	86	9	51	42	0	0	57	0.98
968119--968178	30	2.0	30	90	0	93	45	13	6	35	1.70
968755--968789	18	1.9	18	88	11	54	60	0	0	40	0.97
968960--969032	27	2.7	27	75	10	78	53	2	0	43	1.15
969157--969192	11	3.2	11	92	4	54	19	0	0	80	0.71
969157--969203	16	2.9	16	87	12	69	17	0	2	80	0.80
969377--969415	16	2.4	16	86	4	51	58	2	0	38	1.12
969396--969451	16	3.0	19	80	19	57	62	1	0	35	1.06
969675--969769	20	4.8	20	69	19	65	46	0	1	52	1.07
970147--970187	21	2.0	22	85	9	59	34	0	0	65	0.93
970340--970425	22	3.9	22	70	11	68	44	0	0	55	0.99
970344--970421	29	2.6	30	80	10	88	43	0	0	56	0.99
971335--971379	2	22.5	2	100	0	90	0	48	0	51	1.00
971802--971844	4	10.8	4	94	0	68	20	0	27	51	1.48
975829--975874	20	2.4	19	85	7	58	63	0	0	36	0.95
997518--997555	15	2.6	15	91	4	60	47	0	0	52	1.00
997925--998018	33	2.8	33	78	12	95	52	0	2	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
997925--998022	34	2.9	32	79	10	99	51	0	2	46	1.12
997985--998028	20	2.0	22	87	12	65	45	0	0	54	0.99
998033--998085	22	2.5	22	81	6	65	47	0	0	52	1.00
998250--998293	17	2.5	18	82	10	56	52	0	2	45	1.13
1003138--1003167	9	3.2	9	95	4	51	53	0	3	43	1.17
1010901--1010933	17	1.9	18	88	11	52	33	0	0	66	0.92
1011774--1011856	22	3.5	23	75	16	71	42	0	0	57	0.98
1011818--1011885	15	4.1	15	72	20	55	45	0	0	54	0.99
1012203--1012254	12	4.4	12	83	9	63	42	0	0	57	0.98
1012201--1012254	23	2.3	23	81	15	74	44	0	0	55	0.99
1012593--1012631	18	2.2	18	86	9	53	58	0	0	41	0.98
1012658--1012719	22	2.7	22	78	16	63	56	0	0	43	0.99
1012817--1012843	14	1.9	14	100	0	54	66	0	0	33	0.92
1013600--1013688	41	2.2	39	77	13	92	52	2	0	44	1.13
1013602--1013678	26	2.9	27	79	12	70	54	2	0	42	1.14
1014261--1014303	16	2.7	16	89	7	61	48	6	6	37	1.57
1014376--1014405	15	2.0	15	93	0	51	56	0	6	36	1.26
1018207--1018244	17	2.3	17	82	17	53	50	5	0	44	1.24
1018492--1018542	10	5.0	10	81	9	50	66	0	0	33	0.92
1018485--1018544	16	3.8	16	72	14	52	65	0	0	35	0.93
1019482--1019550	21	3.2	24	71	23	71	55	0	0	44	0.99
1019495--1019544	15	3.3	15	74	17	50	58	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020225--1020274	14	3.6	14	76	17	52	54	0	0	46	1.00
1020226--1020277	27	1.9	27	88	7	79	55	0	0	44	0.99
1020452--1020491	14	2.8	15	92	7	66	35	2	0	62	1.09
1020449--1020503	19	2.9	19	81	5	58	36	1	0	61	1.06
1020525--1020577	22	2.7	19	73	18	54	69	0	1	28	0.99
1020713--1020770	15	3.4	17	75	15	57	53	0	0	46	1.00
1020757--1020796	20	2.0	19	85	9	53	65	0	0	35	0.93
1020730--1020799	32	2.2	30	78	11	77	57	0	0	42	0.99
1020971--1021002	2	16.0	2	100	0	64	50	0	0	50	1.00
1021255--1021295	22	1.9	22	90	5	66	43	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10