genome.fa.s264.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold264
Parameters: 2 7 7 80 10 50 1000
Length:  1000627

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 631 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934818--934887	24	3.1	24	84	16	112	42	11	15	30	1.82
935736--935807	37	1.9	37	91	0	117	41	15	33	9	1.80
935786--937475	62	27.6	61	75	10	849	29	18	26	25	1.98
935786--937473	125	13.8	124	73	12	915	29	18	26	25	1.98
936288--936420	55	2.4	56	82	5	153	29	18	24	27	1.98
936447--936704	61	4.3	62	83	5	318	26	18	27	27	1.99
936722--937475	61	12.4	62	84	3	899	29	17	26	26	1.98
936728--937477	182	4.1	184	87	3	1018	29	17	26	26	1.98
940787--941255	49	9.5	49	80	4	476	33	17	24	24	1.97
940882--941252	199	1.9	199	83	1	492	32	18	24	24	1.97
964041--964244	79	2.6	78	84	5	252	30	17	27	24	1.97
964120--964348	109	2.1	108	86	4	311	33	17	25	24	1.96
964196--964269	28	2.6	28	82	4	87	27	20	29	22	1.98
966752--966781	13	2.3	13	100	0	60	40	13	16	30	1.87
970143--970214	32	2.2	32	85	0	99	37	11	15	36	1.83
970145--970211	16	4.0	16	70	26	50	35	10	16	37	1.83
970245--970292	20	2.4	20	86	6	62	31	14	12	41	1.83
981674--982597	462	2.0	462	95	0	1670	32	21	20	25	1.97
984680--984749	9	7.6	9	76	10	61	84	10	1	4	0.82
984681--984749	18	3.7	18	83	7	84	84	10	1	4	0.83
988577--988648	19	3.7	19	85	7	83	37	11	15	36	1.83
993127--993166	20	2.0	20	100	0	80	15	0	40	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993738--993828	20	4.6	19	83	5	83	31	17	15	35	1.91
993776--993829	19	2.8	19	91	2	81	29	16	16	37	1.91
993858--993909	20	2.6	20	87	0	68	34	15	15	34	1.89
995504--995538	15	2.3	15	95	0	61	42	0	28	28	1.56
996380--996446	37	1.9	35	88	11	102	29	25	11	32	1.92
996925--996950	13	2.0	13	100	0	52	30	23	15	30	1.95
997011--997049	10	4.0	10	93	3	53	38	5	30	25	1.78
997126--997196	20	3.5	20	77	11	74	29	12	16	40	1.86
997236--997276	21	2.0	21	85	9	57	39	9	12	39	1.76

Tables:   1   2   3   4   5   6

The End!