genome.fa.s273.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold273
Parameters: 2 7 7 80 10 50 1000
Length:  1282806

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 977 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612139--612205	23	3.1	22	79	14	70	65	1	0	32	1.02
612293--612322	15	2.1	14	93	6	51	63	3	0	33	1.11
612497--613109	308	2.0	308	87	2	874	36	11	13	39	1.80
615936--615966	16	1.9	16	93	0	53	48	0	0	51	1.00
616160--616192	16	2.0	17	88	5	50	51	0	6	42	1.26
616433--616479	15	3.4	15	77	22	66	48	0	0	51	1.00
616430--616479	26	1.9	26	95	0	91	52	0	0	48	1.00
616883--616922	20	2.0	20	90	0	62	50	0	0	50	1.00
622359--622388	15	2.0	15	100	0	60	33	6	26	33	1.83
622527--622571	2	22.5	2	100	0	90	48	0	0	51	1.00
624074--624104	4	7.8	4	92	0	53	22	22	0	54	1.44
625602--625658	23	2.5	22	77	8	60	64	0	1	33	1.04
625597--625659	30	2.2	28	86	11	83	68	0	1	30	0.99
625745--625770	10	2.6	10	100	0	52	65	0	0	34	0.93
626250--626294	23	2.0	22	83	12	56	31	0	0	68	0.89
626394--626432	16	2.2	18	86	13	55	58	0	0	41	0.98
626393--626437	19	2.4	19	81	7	56	62	0	0	37	0.96
627065--627098	15	2.3	15	89	0	50	47	2	0	50	1.16
627163--627192	15	2.1	14	93	6	51	50	6	0	43	1.28
627160--627199	19	2.0	19	85	9	53	50	7	0	42	1.30
628040--628086	19	2.4	20	79	10	53	74	4	2	19	1.09
629574--629615	11	3.7	11	84	6	57	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
629622--629680	18	3.5	17	74	19	61	40	1	0	57	1.09
629574--629715	18	8.1	18	65	20	59	36	0	1	61	1.10
629978--630030	27	2.0	27	88	7	81	54	0	0	45	0.99
633705--633731	2	13.5	2	100	0	54	48	0	0	51	1.00
634697--634723	14	1.9	14	100	0	54	18	0	0	81	0.69
638896--638926	2	15.5	2	100	0	62	0	51	0	48	1.00
640949--641084	30	4.5	30	77	8	116	39	5	0	53	1.30
640949--641084	60	2.3	60	82	5	150	39	5	0	53	1.30
641540--641628	26	3.6	24	72	17	67	57	1	6	34	1.33
641540--641623	38	2.3	38	81	10	111	57	1	7	34	1.34
643925--643980	19	2.9	19	79	15	62	30	0	0	69	0.89
643914--643985	24	2.9	25	80	12	85	33	0	0	66	0.92
643912--643997	24	3.5	24	74	13	68	36	1	0	62	1.03
646928--646984	22	2.6	22	91	0	96	26	21	12	40	1.88
647019--647056	20	2.0	20	89	5	60	34	15	13	36	1.87
647501--647539	20	2.0	20	94	0	69	38	17	12	30	1.88
648048--648122	20	3.8	20	80	0	96	33	13	12	41	1.81
648048--648125	40	2.0	39	89	2	120	33	12	12	41	1.82
662107--662131	13	1.9	13	100	0	50	88	12	0	0	0.53
663382--664085	57	12.2	57	87	3	932	29	30	16	24	1.96
663386--664085	257	2.7	257	89	1	1051	29	30	16	23	1.96
663379--664085	286	2.5	286	88	2	1024	29	30	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663382--664085	29	24.5	29	87	2	967	29	30	16	24	1.96
664658--664751	20	4.7	20	80	2	100	35	12	12	39	1.82
664658--664751	40	2.3	40	87	3	136	35	12	12	39	1.82
669339--669413	20	3.8	20	78	0	87	34	13	12	40	1.81
669339--669416	40	2.0	39	87	2	111	34	12	12	39	1.82
673084--673125	20	2.0	21	90	4	68	35	9	14	40	1.78
672960--673225	113	2.4	113	95	1	471	33	12	15	37	1.86
673197--673269	20	3.7	19	80	14	85	38	15	12	34	1.84
674902--674949	19	2.5	19	76	13	53	56	10	0	33	1.34
674226--675344	559	2.0	559	89	3	1701	44	12	10	31	1.77
675569--675624	29	1.9	29	85	0	76	30	0	1	67	1.01
675576--675629	22	2.5	22	82	5	58	33	0	1	64	1.04
676565--676604	20	2.0	21	90	5	64	50	5	0	45	1.23
678498--678528	16	2.0	15	93	6	53	35	0	0	64	0.94
679256--679300	2	22.5	2	95	0	81	53	0	0	46	1.00
680607--680663	10	5.9	9	78	19	53	63	0	0	36	0.95
680609--680663	19	2.9	19	82	10	69	63	0	0	36	0.95
680637--680753	16	7.4	16	70	20	70	56	1	0	41	1.09
680607--680664	17	2.9	21	73	24	61	62	0	0	37	0.96
680647--680744	26	3.5	26	73	21	74	54	2	0	43	1.12
680629--680723	31	3.0	30	79	11	93	55	2	0	42	1.11
680619--680760	16	8.8	16	67	20	57	58	1	0	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
683840--683890	11	5.1	11	75	20	58	41	0	0	58	0.98
683839--683886	18	2.7	18	81	9	62	39	0	0	60	0.97
683862--683904	21	2.0	22	86	4	61	44	0	0	55	0.99
683859--683904	22	2.3	21	82	14	53	43	0	0	56	0.99
684660--684688	2	14.5	2	100	0	58	48	0	0	51	1.00
686744--686799	20	2.8	19	82	17	62	33	0	1	64	1.04
687101--687143	23	1.9	23	95	4	79	16	16	18	48	1.81
695099--695129	16	1.9	16	93	0	53	19	0	3	77	0.90
696871--697560	78	8.9	78	74	7	481	38	11	21	28	1.89
696872--697557	157	4.4	151	74	10	485	38	11	21	28	1.89
696873--697557	311	2.2	310	85	3	849	38	11	21	28	1.89
699985--700071	41	2.1	41	84	0	111	31	18	13	36	1.90
701772--701805	17	1.9	17	88	5	50	44	20	8	26	1.81
701895--701923	3	9.7	3	100	0	58	31	0	0	68	0.89
702327--702385	21	2.8	21	82	7	57	45	0	5	49	1.24
702462--702540	32	2.4	32	85	10	97	48	0	3	48	1.19
702489--702540	15	3.3	15	80	19	70	51	0	3	44	1.19
702492--702543	16	3.2	16	75	20	63	50	0	3	46	1.20
702516--702614	36	2.6	37	87	9	137	55	4	0	40	1.19
702571--702628	25	2.4	26	86	11	79	55	3	0	41	1.17
709963--710016	20	2.7	20	85	2	63	31	14	12	40	1.84
709970--710016	21	2.3	20	85	3	58	31	17	12	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711239--712030	394	2.0	394	85	1	1050	38	21	21	19	1.94
726107--726231	52	2.4	52	90	0	187	28	16	17	37	1.91
726113--726251	52	2.7	52	83	4	156	31	15	17	34	1.92
726240--726264	13	1.9	13	100	0	50	36	16	16	32	1.90
726305--726371	33	2.0	33	88	0	98	40	14	11	32	1.83
726327--726351	13	1.9	13	100	0	50	32	16	16	36	1.90
727502--727640	69	2.0	69	100	0	278	35	14	7	42	1.73
730294--730354	30	2.1	29	91	8	99	67	1	3	27	1.16
731622--731657	14	2.6	14	91	4	56	41	0	0	58	0.98
731623--731667	14	3.2	13	84	12	54	40	0	2	57	1.11
732170--732228	28	2.3	27	83	13	72	30	0	5	64	1.15
734460--734720	89	2.9	88	85	4	317	35	19	7	37	1.80
735084--735201	39	3.1	39	69	7	96	41	10	3	44	1.55
735815--735848	2	17.0	2	100	0	68	50	0	50	0	1.00
736060--736122	33	1.9	33	93	0	108	42	7	6	42	1.59
740174--740214	21	2.0	21	95	0	73	48	0	2	48	1.14
741262--741319	26	2.3	25	78	3	62	41	3	3	51	1.35
748125--748385	79	3.3	79	86	1	335	23	35	20	20	1.96
750311--750335	13	1.9	13	100	0	50	32	16	16	36	1.90
750344--750469	52	2.4	52	95	0	234	34	18	19	27	1.95
755764--755799	18	2.1	17	89	5	54	75	0	0	25	0.81
756605--756642	18	2.2	18	86	13	53	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757263--757332	13	5.7	12	75	16	56	44	0	2	52	1.15
758442--758487	24	1.9	24	81	0	56	47	0	0	52	1.00
759320--759346	7	3.9	7	100	0	54	14	0	0	85	0.61
759776--759823	25	1.9	25	83	8	62	41	2	2	54	1.24
760686--760756	20	3.5	20	75	12	83	28	15	9	46	1.77
760674--760750	39	2.0	39	100	0	154	31	12	10	45	1.76
760675--760738	20	3.2	20	74	12	78	31	12	9	46	1.73
760759--760815	3	19.0	3	96	0	105	64	0	1	33	1.04
762441--762471	16	1.9	16	93	0	53	32	0	0	67	0.91
764023--764085	22	2.9	22	90	0	108	33	6	3	57	1.40

Tables:   1   2   3   4   5   6   7   8   9