Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold273
Parameters: 2 7 7 80 10 50 1000
Length:  1282806

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 977 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1274950--1275015
15
4.2
15
77
11
69
86
4
9
0
0.70
1274950--1274999
16
3.1
16
83
13
66
90
6
4
0
0.57
1274950--1274999
1
50.0
1
79
0
55
90
6
4
0
0.57
1275980--1276654
54
12.3
54
88
6
904
29
30
20
19
1.97
1276250--1276386
27
5.1
26
64
22
86
29
34
19
16
1.94
1275980--1276631
325
2.0
330
89
6
1006
29
30
20
19
1.97
1276490--1276583
29
3.3
29
65
19
72
27
31
19
21
1.97
1277243--1277282
20
2.0
20
100
0
80
85
0
5
10
0.75
1277246--1277285
21
1.9
21
100
0
80
87
0
2
10
0.63
1277288--1277344
21
2.7
21
97
0
105
33
10
19
36
1.86
1277402--1277463
31
2.0
32
96
3
117
35
12
16
35
1.87
1277420--1277444
13
1.9
13
100
0
50
36
16
16
32
1.90
1277401--1277466
19
3.8
19
75
24
83
36
12
15
36
1.84
1277506--1277531
13
2.0
13
100
0
52
30
15
15
38
1.88
1277486--1277552
33
2.0
33
88
0
98
25
14
16
43
1.86
1280046--1280214
53
3.3
51
76
11
150
30
26
11
31
1.92
1280197--1280278
28
2.9
28
80
7
87
24
30
17
28
1.97

Tables:   1   2   3   4   5   6   7   8   9

The End!