genome.fa.s276.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold276
Parameters: 2 7 7 80 10 50 1000
Length:  761718

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 620 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359565--359638	20	3.7	20	78	3	94	35	12	20	32	1.89
359583--359658	21	3.7	21	80	3	100	40	10	18	30	1.84
359565--359658	41	2.3	41	98	0	179	38	11	19	30	1.87
359697--359722	13	2.0	13	100	0	52	38	15	15	30	1.88
360180--360246	37	1.9	35	88	11	102	32	11	25	29	1.92
363417--363441	13	1.9	13	100	0	50	36	16	16	32	1.90
364596--364642	23	2.0	23	100	0	94	31	4	12	51	1.59
365281--365354	20	3.7	20	78	3	94	35	12	20	32	1.89
365299--365374	21	3.7	21	80	3	100	40	10	18	30	1.84
365281--365374	41	2.3	41	98	0	179	38	11	19	30	1.87
365413--365438	13	2.0	13	100	0	52	38	15	15	30	1.88
365896--365962	37	1.9	35	88	11	102	32	11	25	29	1.92
371478--371552	20	3.8	20	83	0	105	30	13	13	42	1.82
384808--384849	11	3.7	11	82	17	59	85	14	0	0	0.59
384811--384849	10	3.6	10	86	13	51	87	12	0	0	0.55
384808--384842	12	2.9	12	82	0	52	85	14	0	0	0.59
390514--390562	22	2.2	22	100	0	98	67	8	8	16	1.40
391481--391555	20	3.8	20	80	3	80	41	12	12	34	1.79
391478--391555	40	2.0	39	84	2	102	41	12	11	34	1.80
392091--392867	32	24.3	32	96	0	1358	14	18	35	31	1.91
392859--393623	27	28.0	27	90	3	1174	27	14	34	23	1.94
392859--393623	82	9.3	81	91	2	1174	27	14	34	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392859--393623	55	14.0	54	90	2	1174	27	14	34	23	1.94
401131--401179	22	2.2	22	100	0	98	67	8	8	16	1.40
402099--402173	20	3.8	20	80	3	80	40	12	13	34	1.81
402096--402173	40	2.0	39	87	2	111	39	12	12	34	1.82
404455--404553	39	2.5	39	86	0	135	43	4	15	37	1.65
406029--406099	35	2.0	35	97	0	133	38	11	15	35	1.83
412671--412795	52	2.4	52	95	0	223	28	17	18	36	1.94
412671--412815	52	2.8	51	89	4	211	29	17	18	34	1.94
412804--412828	13	1.9	13	100	0	50	36	16	16	32	1.90
412870--412939	33	2.1	33	89	0	104	40	14	11	34	1.82
412895--412919	13	1.9	13	100	0	50	32	16	16	36	1.90
416052--416185	71	1.9	71	92	0	223	29	16	19	35	1.94
418400--418446	24	2.0	24	83	8	60	61	12	0	25	1.31
418421--418902	73	6.6	73	84	6	496	53	13	2	30	1.54
418421--418902	145	3.3	147	82	6	509	53	13	2	30	1.54
419040--419257	74	3.0	74	75	8	227	54	10	1	33	1.46
418566--419593	475	2.2	471	82	6	1217	52	11	2	33	1.51
419179--419943	428	1.8	424	84	5	972	51	12	2	33	1.52
419965--420096	71	1.9	71	84	6	178	56	11	1	31	1.44
420038--420087	26	2.0	26	84	7	68	60	6	0	34	1.21
420244--420436	73	2.7	71	82	5	201	52	11	3	32	1.53
422722--422833	56	2.0	56	85	0	152	33	12	7	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423695--423803	41	2.7	41	84	5	139	44	16	22	15	1.85
423705--423833	41	3.1	41	80	6	136	44	13	24	17	1.85
423759--423959	100	2.0	100	97	0	375	37	9	29	23	1.86
424697--424831	60	2.3	59	83	7	166	47	14	14	22	1.81
426055--426142	20	4.8	20	76	18	100	26	15	13	44	1.84
428471--428633	51	3.2	52	79	5	172	30	24	10	34	1.89
428620--428691	28	2.6	29	84	6	94	20	30	19	29	1.97
428803--428900	51	1.9	51	89	0	151	33	21	10	34	1.87
428571--428849	110	2.6	107	78	4	317	27	24	13	35	1.92
428837--428993	79	2.0	81	80	11	180	28	22	14	34	1.94
428653--429230	240	2.4	240	89	1	858	28	25	13	33	1.93
429028--429144	51	2.3	51	89	2	182	31	30	9	28	1.88
428885--429090	110	1.9	110	82	3	265	28	24	15	32	1.95
429077--429385	79	3.9	78	80	3	332	26	25	15	32	1.95
441766--441827	19	3.5	19	82	17	96	85	14	0	0	0.60
441782--441836	15	3.5	15	87	9	74	85	12	1	0	0.68
441766--441838	19	3.8	18	77	22	69	84	13	1	0	0.68
441766--441827	7	9.3	7	76	16	69	85	14	0	0	0.60
441767--441827	24	2.3	27	83	16	83	85	14	0	0	0.60
442856--443258	111	3.5	109	79	8	349	27	26	19	26	1.99
442857--443252	55	7.0	55	80	7	366	27	26	19	26	1.99
442825--443266	61	7.6	61	79	10	307	26	26	19	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443230--443342	45	2.7	43	77	14	128	22	27	14	36	1.92
444102--444294	20	9.6	20	73	14	139	29	15	12	41	1.84
444160--444189	13	2.3	13	100	0	60	30	16	13	40	1.87
446599--446763	51	3.2	51	79	1	179	29	23	12	33	1.92
446752--446823	28	2.6	27	84	8	92	25	33	15	26	1.95
446916--447032	51	2.3	52	86	7	168	31	24	11	31	1.92
446705--446980	110	2.6	107	76	5	279	28	26	12	32	1.93
447155--447256	51	2.0	51	88	7	154	31	27	9	31	1.89
446775--447272	239	2.1	240	89	2	761	29	26	12	32	1.92
447159--447272	51	2.2	51	83	6	142	32	30	5	31	1.80
447306--447506	79	2.5	78	74	8	199	29	19	13	36	1.90
447206--447506	158	1.9	159	79	6	342	28	23	13	34	1.92
448673--449006	112	3.0	110	85	6	388	39	14	13	32	1.85
449620--449666	1	47.0	1	82	0	58	2	4	2	91	0.55
449606--449673	13	5.2	13	77	13	68	2	7	4	85	0.82
449606--449673	12	5.2	13	77	13	61	2	7	4	85	0.82
449607--449666	24	2.5	24	86	5	77	3	5	3	88	0.70
449620--449666	15	3.1	15	93	3	76	2	4	2	91	0.55
456504--456618	44	2.6	44	87	4	162	22	19	11	46	1.81
456798--457015	89	2.4	89	77	3	233	28	20	8	42	1.81
457231--457441	60	3.5	59	79	5	237	18	16	16	47	1.82
458162--458245	31	2.7	31	82	10	84	23	22	10	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458162--458245	32	2.7	32	81	7	100	23	22	10	42	1.85
458156--458401	62	3.9	62	82	1	267	20	19	13	46	1.84
458479--458553	31	2.4	31	82	4	89	22	24	13	40	1.90
458541--458610	32	2.2	33	84	2	88	18	32	10	38	1.84
458464--458709	127	1.9	126	80	9	277	21	24	12	41	1.88
458567--458730	64	2.6	63	73	8	154	20	23	12	43	1.86
458661--458917	93	2.7	95	78	9	258	21	19	12	47	1.82
458800--458917	33	3.7	31	71	15	98	21	17	12	48	1.80
458789--458909	64	1.9	63	81	8	147	20	19	11	47	1.80
458751--458952	95	2.1	94	82	9	234	22	16	13	47	1.81
458900--458967	31	2.1	34	86	8	97	27	10	8	52	1.65
468188--468228	20	2.0	21	86	9	59	51	0	0	48	1.00
468185--468232	24	2.0	25	84	12	64	52	0	0	47	1.00
468394--468420	2	13.5	2	100	0	54	48	0	51	0	1.00
468614--468643	2	15.0	2	92	0	51	0	46	0	53	1.00
476009--476050	21	2.0	21	86	13	61	40	0	0	59	0.97
476465--476527	19	3.0	21	81	11	67	36	1	0	61	1.05
476478--476544	22	3.2	21	80	16	68	35	1	0	62	1.04
477093--477138	23	2.0	23	86	4	65	43	0	0	56	0.99
477845--478637	392	2.0	394	96	2	1472	52	6	5	36	1.50
479038--479076	21	1.9	21	89	5	62	23	0	5	71	1.05
479225--479276	20	2.7	18	82	14	52	25	0	1	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479386--479437	22	2.5	21	81	9	54	40	0	3	55	1.18
480323--480382	27	2.2	27	84	3	75	58	3	1	36	1.25
481326--481354	11	2.6	11	100	0	58	27	6	0	65	1.18
481590--481636	2	23.5	2	100	0	94	51	0	0	48	1.00
481885--481931	19	2.3	20	82	7	51	63	0	0	36	0.94
481971--482020	21	2.4	22	80	10	59	36	4	2	58	1.29
482708--482759	25	2.1	25	96	0	95	28	13	19	38	1.89
484797--484837	21	2.1	18	86	13	55	68	9	0	21	1.18
485551--485649	16	6.3	15	77	10	83	53	2	1	43	1.19
485564--485650	16	5.5	16	83	4	88	56	2	0	41	1.12

Tables:   1   2   3   4   5   6