genome.fa.s276.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold276
Parameters: 2 7 7 80 10 50 1000
Length:  761718

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 620 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604782--604817	15	2.4	14	86	13	54	38	0	2	58	1.13
605375--605426	17	3.1	17	71	13	54	34	3	0	61	1.14
606387--606438	11	4.8	10	78	21	52	69	1	0	28	0.99
606382--606438	23	2.5	24	83	16	77	68	3	0	28	1.06
606450--606495	18	2.5	19	80	20	53	56	6	6	30	1.50
607266--607302	14	2.8	13	92	8	58	0	16	0	83	0.64
607265--607311	13	3.6	13	83	8	51	4	17	0	78	0.90
607289--607342	26	2.1	26	82	0	63	7	25	1	64	1.30
608006--608047	21	2.0	22	85	4	59	47	2	0	50	1.14
615719--615746	14	2.0	14	100	0	56	35	7	21	35	1.81
617903--617932	7	4.3	7	95	0	51	90	0	10	0	0.47
621815--622232	209	2.0	209	95	0	746	38	9	10	42	1.70
622245--622272	14	2.0	14	100	0	56	50	7	7	35	1.57
626437--626467	6	5.2	6	100	0	62	19	32	32	16	1.94
630934--630971	2	19.0	2	100	0	76	50	0	0	50	1.00
631356--631396	2	20.5	2	100	0	82	51	0	48	0	1.00
632537--632613	20	3.8	20	79	6	84	32	14	9	44	1.76
634775--635163	79	5.0	78	78	6	358	29	24	10	34	1.90
634955--635102	76	1.9	76	84	2	199	30	27	10	31	1.91
634775--635162	155	2.5	158	79	6	396	29	24	10	34	1.90
636184--636208	2	12.5	2	100	0	50	48	0	0	52	1.00
640635--641236	299	2.0	298	94	1	1064	35	14	17	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641811--641837	3	9.0	3	100	0	54	33	0	0	66	0.92
642603--642639	16	2.2	17	86	13	51	81	0	5	13	0.86
646477--646604	51	2.5	51	89	0	193	42	11	18	26	1.85
646659--646709	20	2.5	20	90	0	75	39	13	11	35	1.82
646528--646720	77	2.6	72	85	4	253	44	12	14	29	1.82
648154--648202	24	2.0	24	84	7	64	22	4	4	69	1.23
649032--649062	16	1.9	16	93	0	53	51	0	0	48	1.00
649074--649131	27	2.1	27	84	6	73	65	0	0	34	0.93
649074--649149	22	3.7	20	75	16	66	65	0	0	34	0.93
649112--649149	15	2.4	16	91	4	60	68	0	0	31	0.90
649083--649133	27	1.9	26	92	4	84	62	0	0	37	0.95
649084--649145	27	2.4	26	81	7	72	66	0	0	33	0.92
649348--649392	20	2.3	19	88	11	65	51	0	0	48	1.00
649981--650036	25	2.2	24	79	14	60	46	0	0	53	1.00
650343--650375	16	2.1	16	88	11	50	60	6	3	30	1.36
650491--650530	18	2.2	18	86	4	53	37	7	0	55	1.29
650471--650530	19	3.2	17	75	15	57	40	6	0	53	1.27
651203--651292	24	3.8	23	74	18	78	43	2	18	35	1.63
651715--651752	16	2.3	17	90	4	60	57	7	0	34	1.28
651882--651932	25	2.1	24	82	13	61	33	3	0	62	1.13
653082--653126	23	2.0	23	83	12	58	26	6	2	64	1.30
653470--653507	20	2.1	19	85	14	53	44	7	0	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
654488--654520	12	2.5	13	90	9	50	51	0	0	48	1.00
654484--654526	13	3.1	14	78	21	54	46	0	0	53	1.00
655277--655315	21	1.9	19	85	10	51	69	0	0	30	0.89
655651--655732	24	3.5	24	72	20	82	42	7	4	45	1.53
655674--655756	24	3.5	24	73	12	64	42	12	2	43	1.55
655648--655759	48	2.4	48	86	4	131	43	10	3	41	1.56
655966--656050	24	3.6	23	73	21	77	43	9	2	44	1.49
655672--656221	295	1.9	295	90	0	886	41	13	6	38	1.70
660027--660114	33	2.7	32	74	13	79	73	2	19	4	1.11
660064--660115	15	3.1	16	78	21	54	78	0	17	3	0.89
665487--665539	16	3.2	16	79	15	54	41	3	1	52	1.30
666239--666268	14	2.1	15	93	6	53	53	0	0	46	1.00
666492--666523	3	10.7	3	100	0	64	68	0	0	31	0.90
668954--668992	2	19.5	2	100	0	78	48	0	0	51	1.00
669473--669509	6	6.2	6	100	0	74	0	0	51	48	1.00
670189--670267	28	2.8	28	69	11	70	44	0	0	55	0.99
670816--670848	17	1.9	17	100	0	66	30	0	9	60	1.27
671384--671418	16	2.2	16	90	5	54	31	2	0	65	1.07
671412--671501	47	1.9	47	81	4	110	35	2	2	60	1.22
672638--672683	14	3.2	14	80	14	58	54	2	6	36	1.39
673306--673347	21	2.0	22	85	4	59	23	2	2	71	1.10
673310--673357	21	2.2	22	78	14	55	29	2	2	66	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673419--673477	16	3.5	16	76	19	57	37	0	0	62	0.95
673426--673463	20	2.0	18	90	10	58	36	0	0	63	0.95
673446--673491	17	2.6	17	80	16	58	45	0	0	54	0.99
673422--673491	35	2.0	34	84	13	90	41	0	0	58	0.98
673501--673530	2	15.0	2	100	0	60	50	0	0	50	1.00
674106--674145	18	2.2	19	86	4	55	42	2	0	55	1.13
675064--675110	24	2.0	24	95	0	85	40	0	8	51	1.33
676251--676281	4	7.8	4	92	0	53	25	3	22	48	1.66
678832--678881	17	2.8	18	82	11	68	60	0	0	40	0.97
678832--678882	18	2.8	18	82	14	61	60	0	0	39	0.97
678887--678967	18	4.4	19	80	9	96	45	0	0	54	0.99
679420--679466	14	3.4	14	76	5	51	57	0	0	42	0.98
680962--680994	17	2.0	17	88	5	50	15	3	12	69	1.30
681651--681697	20	2.3	20	96	0	85	17	14	8	59	1.59
681757--681821	20	3.2	22	72	14	59	15	21	12	50	1.76
681903--681950	20	2.4	20	82	0	60	29	10	2	58	1.43
681976--682015	21	2.0	21	85	5	55	22	22	10	45	1.82
682644--682843	73	2.7	74	81	4	242	40	17	9	33	1.81
684587--684661	28	2.6	30	83	12	95	65	10	1	22	1.31
684767--684801	18	1.9	18	88	0	52	5	40	0	54	1.24
684819--684919	25	3.9	25	74	18	66	26	3	0	69	1.06
685234--685279	23	2.0	23	95	0	83	54	4	0	41	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686388--686425	20	1.9	20	84	10	51	36	2	7	52	1.45
690345--690404	15	4.2	14	77	16	61	65	3	0	31	1.09
690471--690504	16	2.1	16	89	10	52	64	5	0	29	1.17
691528--691626	44	2.3	44	75	8	105	55	0	2	42	1.11
692431--692505	25	3.0	24	68	22	57	54	0	1	44	1.08
692470--692524	16	3.4	16	71	16	51	50	1	1	45	1.22
692453--692500	25	2.0	23	88	11	71	54	0	0	45	0.99
692447--692505	24	2.4	26	78	21	81	55	0	0	44	0.99
694299--694349	26	2.0	26	88	0	75	56	0	1	41	1.10
694316--694357	19	2.2	19	83	8	50	52	0	4	42	1.22
695187--695228	20	2.1	20	82	8	50	50	0	19	30	1.48
697609--697701	20	4.3	21	72	11	73	51	1	1	46	1.15
697589--697701	15	7.8	15	72	11	58	49	0	2	46	1.21
699319--699352	2	17.0	2	100	0	68	50	0	0	50	1.00
700448--700497	19	2.7	18	81	15	57	38	0	0	62	0.96
700460--700520	17	3.8	17	70	24	60	39	0	0	60	0.97
700469--700518	15	3.4	15	72	22	52	40	0	0	60	0.97
700442--700518	30	2.6	29	82	12	86	40	0	0	59	0.97
700442--700539	47	2.1	48	83	9	121	42	0	1	56	1.06
713865--713902	14	2.7	15	84	12	53	39	0	2	57	1.12
716899--716974	40	1.9	40	94	0	134	46	7	15	30	1.75
716931--716986	29	1.9	29	96	0	103	44	8	14	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720405--720435	8	3.9	8	91	0	53	58	0	0	41	0.98
721742--721780	17	2.4	17	86	4	53	64	0	2	33	1.08
722136--722195	24	2.5	23	75	21	61	66	5	0	28	1.12
722193--722248	20	2.8	21	78	8	71	60	0	1	37	1.07
722143--722291	18	8.3	18	65	17	60	61	2	0	35	1.12
722214--722299	32	2.8	32	82	7	106	59	1	0	39	1.05
722596--722621	2	13.0	2	100	0	52	0	50	0	50	1.00
726822--727020	98	2.0	99	84	2	258	26	16	16	40	1.89
730334--730364	2	15.5	2	100	0	62	51	0	0	48	1.00
730903--730928	12	2.2	12	100	0	52	84	0	15	0	0.62

Tables:   1   2   3   4   5   6