genome.fa.s276.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold276
Parameters: 2 7 7 80 10 50 1000
Length:  761718

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 620 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187931--187967	2	18.5	2	100	0	74	51	0	48	0	1.00
188643--188672	14	2.1	14	93	0	51	40	3	16	40	1.65
191786--191829	14	3.1	14	74	6	52	61	0	4	34	1.16
192578--192645	33	2.1	33	97	0	127	33	27	5	32	1.81
193413--193446	2	17.0	2	100	0	68	50	0	0	50	1.00
196046--196107	24	2.4	26	78	13	74	25	8	16	50	1.72
198621--198666	21	2.1	22	84	4	58	30	19	30	19	1.97
200578--200646	24	2.8	24	82	4	75	21	5	26	46	1.74
202386--202424	21	1.9	19	85	10	51	51	7	2	38	1.44
203149--203301	75	2.0	75	97	0	288	29	11	15	44	1.80
204448--204526	37	2.2	37	88	2	124	37	11	17	32	1.86
211824--211873	25	2.0	25	100	0	100	20	12	28	40	1.87
211975--212035	30	2.0	30	90	0	95	36	6	24	32	1.81
216676--216705	13	2.3	13	100	0	60	30	16	13	40	1.87
219164--219280	51	2.3	51	89	0	180	29	21	13	35	1.92
219263--219334	28	2.6	28	93	4	119	23	29	20	26	1.99
219133--219464	158	2.1	157	82	5	393	27	25	15	32	1.95
219411--219590	79	2.3	79	81	1	209	29	22	12	35	1.91
233480--233511	2	16.0	2	100	0	64	50	0	0	50	1.00
235118--235443	163	2.0	163	98	0	625	29	8	12	49	1.70
236830--236856	6	4.5	6	100	0	54	37	0	29	33	1.58
239672--239718	23	2.0	23	84	8	60	61	4	4	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
239684--239726	23	1.9	23	85	4	61	58	4	6	30	1.45
239819--239849	2	15.5	2	100	0	62	48	0	0	51	1.00
240520--240561	18	2.4	18	88	4	59	57	0	0	42	0.99
240560--240611	25	2.1	25	85	7	70	53	1	0	44	1.11
241213--241244	14	2.2	15	94	5	57	71	0	0	28	0.86
244913--244943	2	15.5	2	100	0	62	48	0	0	51	1.00
245124--245162	19	2.1	19	85	9	53	35	0	2	61	1.10
245431--245476	20	2.2	21	81	14	60	63	0	0	36	0.95
245451--245483	14	2.3	15	89	5	50	66	0	0	33	0.92
246578--246604	2	13.5	2	100	0	54	51	0	0	48	1.00
249684--249723	3	13.3	3	100	0	80	32	0	0	67	0.91
250055--250096	21	2.0	22	81	13	52	38	7	0	54	1.28
250055--250096	22	2.0	21	81	13	50	38	7	0	54	1.28
250648--250690	7	5.9	7	81	10	50	55	2	0	41	1.12
250651--250690	15	2.7	15	85	11	55	52	2	0	45	1.14
250872--250896	7	3.6	7	100	0	50	76	12	0	12	1.04
251323--251363	21	2.0	20	86	13	57	41	0	0	58	0.98
255269--255486	59	3.8	59	82	7	218	31	31	18	18	1.95
255344--255512	59	2.9	59	84	8	177	33	30	17	18	1.94
260202--260226	2	12.5	2	100	0	50	48	0	0	52	1.00
260260--260285	7	3.7	7	100	0	52	46	0	0	53	1.00
260517--260551	14	2.5	14	85	0	52	37	0	11	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269500--269524	13	1.9	13	100	0	50	32	16	16	36	1.90
269512--269564	20	2.6	21	82	8	65	37	15	16	30	1.90
269624--269649	13	2.0	13	100	0	52	38	15	15	30	1.88
269606--269669	33	2.0	32	90	3	101	39	20	14	26	1.90
275699--275723	13	1.9	13	100	0	50	32	16	20	32	1.94
276169--276212	20	2.1	22	87	8	65	18	47	29	4	1.68
278294--278365	20	3.7	20	90	1	110	38	23	12	25	1.90
279786--279953	5	34.2	5	63	18	50	69	4	6	19	1.30
279786--279881	14	6.7	14	74	8	68	69	3	7	19	1.26
279786--279953	9	17.7	9	67	18	58	69	4	6	19	1.30
279848--279946	39	2.6	39	88	1	146	69	7	5	18	1.30
281435--281504	27	2.5	28	74	2	70	48	5	8	37	1.58
281711--281793	22	3.3	26	75	16	86	49	6	6	38	1.52
281751--281808	27	2.1	27	81	6	64	50	3	5	41	1.42
282167--282197	16	2.0	15	93	6	53	19	22	12	45	1.84
291067--291651	174	3.5	170	85	8	742	38	13	11	36	1.81
293658--293741	28	3.0	28	84	6	100	26	16	33	23	1.96
293725--293841	51	2.3	52	89	1	173	30	11	23	33	1.91
293828--293923	28	3.4	28	88	0	138	25	18	32	23	1.97
293658--294029	187	2.0	188	94	0	647	30	13	27	28	1.94
293911--294080	52	3.3	51	82	2	214	32	11	25	30	1.91
293852--294245	211	1.9	212	88	2	605	30	12	26	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294063--294135	27	2.6	28	81	14	89	19	20	35	24	1.95
296611--296636	13	2.0	13	100	0	52	38	15	15	30	1.88
296590--296656	33	2.0	33	88	0	98	43	16	14	25	1.86
296676--296743	19	3.9	18	76	23	83	38	14	11	35	1.83
296698--296722	13	1.9	13	100	0	50	32	16	16	36	1.90
296679--296741	32	2.0	32	96	0	117	36	15	12	34	1.86
296798--296855	21	2.8	21	97	0	107	37	18	10	32	1.85
297592--298072	59	8.3	59	86	6	598	23	20	29	25	1.99
299058--299092	15	2.3	15	90	0	52	0	5	8	85	0.73
311357--311438	28	2.9	28	83	7	96	25	17	32	24	1.96
311421--311591	53	3.3	51	80	4	198	33	11	25	29	1.91
311574--311672	28	3.5	28	88	0	144	24	18	34	23	1.96
311661--311830	52	3.3	51	81	2	196	32	11	24	31	1.90
311695--311830	51	2.6	52	85	1	175	33	12	24	29	1.92
311813--311879	28	2.4	28	87	2	91	20	17	37	23	1.94
311602--311999	211	1.9	211	87	2	593	30	12	27	29	1.93
314359--314384	13	2.0	13	100	0	52	38	15	15	30	1.88
314338--314404	33	2.0	33	88	0	98	43	16	14	25	1.86
314424--314491	19	3.9	18	76	23	83	38	14	11	35	1.83
314446--314470	13	1.9	13	100	0	50	32	16	16	36	1.90
314427--314489	32	2.0	32	96	0	117	36	15	12	34	1.86
314527--314603	21	3.7	21	89	3	111	35	16	12	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320691--320716	13	2.0	13	100	0	52	76	0	7	15	0.99
320727--320783	21	2.7	21	97	0	105	33	10	19	36	1.86
320839--320906	19	3.9	19	78	21	85	35	11	14	38	1.83
320860--320884	13	1.9	13	100	0	50	36	16	16	32	1.90
320841--320903	32	2.0	32	96	0	117	34	12	15	36	1.86
320946--320971	13	2.0	13	100	0	52	30	15	15	38	1.88
320926--320992	33	2.0	33	88	0	98	25	14	16	43	1.86
323324--323664	51	6.5	53	70	18	196	29	26	12	31	1.93
323438--323513	27	2.8	28	89	2	109	23	34	21	21	1.97
323648--323722	28	2.7	27	83	6	87	24	32	20	24	1.98
323327--323731	211	1.9	212	89	3	638	27	27	13	30	1.94
324811--324862	27	2.0	25	88	7	77	57	0	0	42	0.98
324792--324862	33	2.2	33	82	7	83	56	0	0	43	0.99
328037--328084	16	3.0	16	90	0	78	39	0	4	56	1.19
328061--328141	21	3.8	21	74	9	76	35	2	3	58	1.29
328037--328124	38	2.3	38	78	7	99	36	1	5	56	1.30
328555--328605	20	2.6	20	79	14	70	43	0	1	54	1.11
329202--329226	2	12.5	2	100	0	50	48	0	0	52	1.00
330871--330914	19	2.3	20	80	11	56	68	2	4	25	1.20
330848--330898	22	2.5	20	78	18	59	70	1	1	25	1.08
330858--330926	16	4.2	16	75	12	59	65	1	4	28	1.21
330841--331001	73	2.2	72	80	11	186	63	1	6	29	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331433--331483	24	2.2	24	85	3	68	19	3	7	68	1.30
331567--331609	18	2.5	17	78	10	52	20	2	6	69	1.23
332555--332639	43	2.0	42	93	4	145	44	3	15	36	1.63
335406--335449	16	2.6	17	82	13	56	27	4	11	56	1.53
339080--339121	20	2.1	20	90	0	66	35	16	19	28	1.93
341170--341204	2	17.5	2	100	0	70	48	0	0	51	1.00
347122--347228	56	1.9	56	88	3	162	35	17	7	39	1.78
351052--351097	2	22.5	2	91	4	74	4	47	0	47	1.21
351831--351873	2	21.5	2	90	0	68	51	0	48	0	1.00
358520--358558	20	2.1	18	85	9	51	58	12	0	28	1.34

Tables:   1   2   3   4   5   6