genome.fa.s276.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold276
Parameters: 2 7 7 80 10 50 1000
Length:  761718

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 620 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485564--485650	32	2.8	32	84	5	106	56	2	0	41	1.12
485577--485669	32	2.9	32	81	12	93	54	3	0	41	1.16
486139--486166	14	2.0	14	100	0	56	57	0	0	42	0.99
486723--486753	16	1.9	16	93	0	53	19	9	19	51	1.74
486882--486973	16	5.8	16	73	8	80	22	8	17	51	1.73
487881--487990	49	2.2	49	90	0	166	39	17	11	31	1.86
490327--490543	79	2.8	78	85	3	267	26	22	14	36	1.93
492242--492286	19	2.4	19	85	7	56	33	0	0	66	0.92
491697--493676	444	4.5	444	97	0	3621	39	5	7	47	1.54
492686--492730	19	2.4	19	85	7	56	33	0	0	66	0.92
493130--493174	19	2.4	19	85	7	56	33	0	0	66	0.92
493574--493618	19	2.4	19	85	7	56	33	0	0	66	0.92
493739--493770	14	2.3	14	100	0	64	25	0	0	75	0.81
493979--494027	19	2.5	20	90	6	73	36	0	0	63	0.95
496231--496268	3	12.7	3	100	0	76	34	0	0	65	0.93
498018--498058	13	3.0	13	86	10	55	29	7	0	63	1.21
503588--503663	20	3.7	20	82	6	89	42	10	15	31	1.81
503690--503715	13	2.0	13	100	0	52	30	15	15	38	1.88
503704--503753	19	2.6	19	93	0	82	44	16	8	32	1.76
505947--505981	17	2.1	17	88	0	52	62	2	28	5	1.32
507335--507451	48	2.4	48	84	0	144	36	17	11	34	1.86
507703--507853	67	2.3	67	82	5	182	37	14	9	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508017--508193	67	2.6	67	76	7	171	29	20	18	32	1.96
509450--509561	60	1.9	59	81	9	138	15	19	10	54	1.70
510540--510588	20	2.5	20	86	6	64	34	22	12	30	1.91
510618--510672	19	2.8	19	88	2	74	34	10	20	34	1.87
514566--514596	16	1.9	16	93	0	53	35	9	0	54	1.33
519605--520338	368	2.0	368	99	0	1459	36	12	12	38	1.81
521516--521545	11	2.7	11	89	0	51	86	0	6	6	0.70
524436--524484	19	2.6	19	78	18	57	0	36	0	63	0.95
524441--524476	17	2.1	17	89	0	54	0	36	0	63	0.94
524475--524538	21	3.2	20	91	6	103	4	31	0	64	1.14
524475--524538	20	3.2	21	93	6	107	4	31	0	64	1.14
524466--524545	21	3.9	21	72	21	78	3	31	0	65	1.11
524714--524772	21	2.9	20	72	23	52	42	0	1	55	1.09
525380--525451	35	2.1	33	82	12	83	56	1	1	40	1.16
525558--525587	15	1.9	16	93	6	53	86	3	0	10	0.67
525659--525701	17	2.5	17	80	3	50	4	37	2	55	1.33
527029--527083	26	2.1	26	83	6	67	49	1	1	47	1.23
527917--527960	9	4.5	10	94	5	65	72	0	0	27	0.85
527901--527960	19	3.0	21	77	20	67	70	0	1	28	0.97
527952--527992	14	2.6	16	78	21	50	58	0	0	41	0.98
527960--528014	25	2.1	25	83	12	67	54	0	0	45	0.99
528113--528154	11	3.7	11	81	12	50	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528184--528246	26	2.4	26	77	15	76	58	1	4	34	1.29
529535--529582	22	2.3	21	86	10	64	75	8	2	14	1.13
530993--531032	12	3.2	13	86	13	66	42	0	0	57	0.98
530977--531029	24	2.2	25	89	3	81	45	1	0	52	1.11
530977--531039	24	2.6	25	80	12	69	47	1	0	50	1.10
533964--534026	18	3.9	17	78	17	64	55	0	0	44	0.99
534044--534121	38	2.0	40	92	5	133	47	0	0	52	1.00
533988--534168	100	1.8	98	80	10	215	49	2	0	47	1.17
534365--534394	9	3.3	9	95	0	51	0	53	0	46	1.00
534392--534465	36	2.1	36	100	0	148	13	39	10	36	1.80
534753--534790	20	1.9	20	94	0	67	36	0	0	63	0.95
537010--537083	28	2.7	27	81	10	78	56	1	0	41	1.07
537390--537623	36	6.8	36	70	16	158	52	0	2	43	1.20
537374--537554	71	2.6	70	82	9	217	54	0	3	41	1.16
537532--537604	17	4.1	17	72	12	58	50	1	0	47	1.09
537587--537652	12	5.6	12	71	26	52	59	1	0	39	1.07
537611--537651	22	1.9	21	85	14	57	60	0	0	39	0.96
537468--537655	100	1.9	99	81	10	231	53	1	2	43	1.19
538004--538059	28	2.0	29	86	10	80	50	0	0	50	1.00
538026--538093	33	2.0	35	85	5	95	51	0	1	47	1.09
538135--538196	28	2.2	28	88	2	88	45	1	0	53	1.10
538179--538219	21	1.9	22	90	5	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538201--538232	14	2.1	16	88	11	50	50	0	0	50	1.00
538235--538281	24	2.0	24	87	8	69	31	2	0	65	1.04
538230--538279	18	3.0	17	81	16	52	34	2	0	64	1.05
538252--538349	47	2.1	45	85	7	126	39	5	0	55	1.22
538297--538332	18	2.1	17	89	5	54	38	0	0	61	0.96
538188--538349	21	7.3	24	66	22	86	40	3	0	56	1.15
540111--540142	2	16.0	2	93	0	55	0	0	53	46	1.00
542935--542967	2	16.5	2	100	0	66	0	0	48	51	1.00
546812--546866	22	2.5	22	90	0	65	34	0	5	60	1.20
546797--546844	16	2.9	17	78	9	55	31	0	4	64	1.12
547718--547766	16	3.0	17	91	8	84	44	0	0	55	0.99
547718--547789	32	2.2	33	82	7	85	44	5	0	50	1.25
548267--548313	2	23.5	2	100	0	94	51	0	48	0	1.00
549456--549515	30	2.0	29	87	3	84	45	13	15	26	1.83
550996--551038	3	14.7	3	82	4	52	30	2	2	65	1.18
564106--564134	2	14.5	2	100	0	58	48	0	0	51	1.00
566371--566447	21	3.7	21	85	3	102	35	11	16	36	1.86
566483--566550	19	3.9	19	78	21	85	35	11	14	38	1.83
566504--566528	13	1.9	13	100	0	50	36	16	16	32	1.90
566485--566547	32	2.0	32	96	0	117	34	12	15	36	1.86
567171--567328	52	3.0	53	80	7	180	29	27	11	32	1.91
567262--567466	107	1.9	107	81	5	243	26	26	16	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567341--567544	78	2.6	78	83	2	239	24	28	18	28	1.98
579928--579986	11	5.2	11	78	8	64	81	3	15	0	0.82
580953--581709	59	13.3	59	86	7	771	26	28	21	24	1.99
580953--581709	119	6.7	117	83	9	794	26	28	21	24	1.99
580948--581709	55	13.4	56	83	10	643	25	28	20	24	1.99
581483--581685	47	4.0	47	76	21	194	29	30	20	19	1.97
581693--581781	42	2.1	41	81	8	99	19	25	13	41	1.88
582453--582506	21	2.6	21	79	5	65	35	14	16	33	1.90
582546--582613	19	3.9	19	72	21	67	35	14	14	35	1.87
582548--582610	32	2.0	32	96	0	117	34	15	15	33	1.90
582633--582687	20	2.8	20	82	0	74	23	14	16	45	1.84
585304--585329	13	2.0	13	100	0	52	30	15	15	38	1.88
586009--586052	21	2.1	21	83	8	54	25	31	4	38	1.76
586041--586092	25	2.1	25	100	0	104	48	11	3	36	1.58
586041--586084	14	3.4	14	75	18	58	47	13	4	34	1.63
587883--587908	13	2.0	13	100	0	52	38	15	15	30	1.88
589987--590017	15	2.1	15	93	0	53	12	22	16	48	1.80
591821--591865	21	2.1	21	84	8	56	22	20	4	53	1.63
594080--594105	13	2.0	13	100	0	52	30	15	15	38	1.88
595055--595130	27	2.8	27	88	6	100	25	32	19	22	1.97
595115--595283	52	3.3	51	78	8	189	30	27	11	31	1.91
594946--595283	104	3.2	103	72	11	308	30	26	12	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594941--595393	212	2.1	212	86	2	642	28	27	13	31	1.94
595004--595421	107	3.9	107	73	13	295	27	27	14	29	1.95
595296--595499	78	2.6	78	82	2	230	24	29	18	28	1.98
596593--596642	20	2.5	20	90	0	73	34	12	14	40	1.82
597211--597236	2	13.0	2	100	0	52	50	0	0	50	1.00
598361--598437	34	2.2	36	86	6	115	50	0	0	49	1.00
598885--598957	2	36.0	2	78	8	76	45	4	5	45	1.45
603436--603528	48	2.0	48	82	6	118	59	0	3	37	1.14
603497--603547	20	2.5	21	84	6	61	56	0	0	43	0.99
604142--604170	2	14.5	2	100	0	58	48	0	0	51	1.00

Tables:   1   2   3   4   5   6