genome.fa.s284.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold284
Parameters: 2 7 7 80 10 50 1000
Length:  702692

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364--405	17	2.5	17	88	0	66	38	0	0	61	0.96
816--876	19	2.9	21	79	18	65	40	0	0	59	0.98
806--834	3	10.0	3	92	7	51	34	0	0	65	0.93
804--877	20	3.6	21	74	17	66	37	0	0	62	0.96
2391--2433	16	2.5	17	81	7	52	44	0	2	53	1.13
2434--2520	38	2.3	39	75	23	96	58	1	2	37	1.18
2435--2490	11	4.9	11	73	16	51	58	1	1	37	1.19
2435--2487	25	2.2	24	86	10	72	60	1	1	35	1.19
4078--4136	21	2.7	23	76	10	70	49	0	0	50	1.00
4131--4207	30	2.5	30	78	14	77	46	0	0	53	1.00
5228--5340	17	7.1	16	74	12	72	45	0	3	51	1.18
5310--5348	16	2.4	16	91	0	60	41	0	2	56	1.13
5330--5472	60	2.4	61	79	10	161	40	0	0	58	1.03
5362--5436	26	3.2	22	75	22	64	44	0	0	56	0.99
5374--5440	17	3.9	17	72	16	59	40	0	0	59	0.97
5421--5494	38	1.9	37	86	10	105	39	1	0	59	1.06
6455--6509	28	2.0	28	88	0	83	36	1	10	50	1.48
6451--6518	28	2.6	25	78	13	82	36	1	10	51	1.45
9130--9201	29	2.4	29	76	15	76	41	1	0	56	1.07
10028--10143	28	4.4	28	73	17	95	49	0	0	50	1.06
10036--10108	23	3.3	23	66	21	57	50	0	0	49	1.00
10025--10135	39	2.8	42	73	15	103	49	0	0	49	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16486--16558	20	3.5	21	81	12	71	41	8	0	50	1.32
21548--21599	20	2.5	20	81	3	59	38	1	0	59	1.08
21976--22015	2	20.0	2	85	10	55	47	5	0	47	1.24
21971--22012	14	3.1	14	86	10	52	45	9	0	45	1.36
23812--23851	20	2.0	20	85	9	55	60	0	2	37	1.11
31493--31554	23	2.8	21	76	9	61	37	0	1	61	1.06
31552--31586	18	1.9	18	94	0	61	62	2	2	31	1.24
32124--32265	34	3.9	38	70	21	101	49	0	0	50	1.05
32183--32221	11	3.5	11	80	13	53	46	2	0	51	1.14
32421--32470	20	2.5	20	100	0	100	50	6	10	34	1.60
32888--32942	17	3.4	15	74	16	56	58	3	1	36	1.26
33589--33638	20	2.5	20	78	9	57	56	4	2	38	1.30
33618--34012	54	7.5	53	78	11	365	53	4	2	40	1.34
33626--34011	207	1.9	205	83	9	514	53	4	2	39	1.34
33618--33970	155	2.2	156	84	10	436	52	4	2	40	1.33
33643--34012	106	3.5	105	81	8	414	52	5	2	40	1.36
34069--34131	21	3.0	20	79	6	72	38	6	6	49	1.54
34546--34620	22	3.5	22	78	7	64	41	6	5	46	1.53
34611--34635	2	12.5	2	100	0	50	52	0	0	48	1.00
34072--35057	499	2.0	486	91	4	1613	42	10	5	40	1.64
35159--35199	21	2.0	21	85	9	57	60	0	0	39	0.96
41066--41108	22	2.0	22	90	9	70	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41915--42089	9	18.8	10	65	22	55	37	1	1	60	1.12
41926--42108	35	5.1	35	70	15	126	39	1	1	57	1.13
41914--41967	6	9.3	6	73	15	51	37	0	0	62	0.95
41947--41993	19	2.4	20	82	13	62	40	0	2	57	1.11
41914--42013	47	2.2	46	83	8	123	41	0	1	58	1.05
41953--41994	19	2.3	18	88	11	68	40	0	2	57	1.12
41958--42007	19	2.5	20	87	6	75	46	0	2	52	1.12
42026--42092	32	2.2	29	84	10	82	35	1	0	62	1.04
42046--42099	17	3.0	18	86	10	67	37	0	0	62	0.95
41940--42099	17	10.0	16	66	26	65	38	1	1	58	1.14
42421--42475	25	2.1	27	90	6	87	52	0	0	47	1.00
42850--42888	15	2.4	17	83	16	55	7	7	0	84	0.77
42851--42888	19	2.0	20	85	15	53	5	7	0	86	0.69
43661--43695	17	1.9	19	88	11	56	51	0	5	42	1.25
44313--44397	8	10.0	8	71	16	55	38	0	0	61	0.96
44301--44420	17	6.9	17	72	15	77	36	0	0	62	1.01
44367--44420	25	2.2	25	86	6	74	33	0	1	64	1.04
44301--44409	32	3.6	31	73	19	106	38	0	0	60	1.03
44383--44430	13	4.0	12	77	17	55	27	0	2	70	0.98
44367--44437	25	2.8	26	81	12	69	32	0	1	66	1.01
44894--44925	2	16.0	2	100	0	64	50	0	0	50	1.00
45043--45070	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45239--45289	27	1.9	26	88	4	75	49	0	0	50	1.00
45232--45282	18	2.9	18	71	5	52	47	0	0	52	1.00
45755--45820	16	4.2	15	75	9	51	24	3	13	59	1.49
47201--47232	2	16.0	2	100	0	64	0	50	0	50	1.00
47922--47961	2	20.0	2	89	0	53	45	2	5	47	1.38
48115--48148	2	17.0	2	100	0	68	50	0	0	50	1.00
50753--50791	2	19.5	2	100	0	78	48	0	0	51	1.00
52374--52417	2	22.0	2	95	0	79	50	2	0	47	1.13
59473--59506	2	17.0	2	100	0	68	50	0	0	50	1.00
60129--60158	14	2.1	14	93	0	51	33	0	30	36	1.58
63543--63570	12	2.3	12	100	0	56	71	7	0	21	1.09
64583--64643	15	3.9	15	77	14	52	42	1	1	54	1.20
64622--64682	30	2.1	29	81	9	70	49	1	0	49	1.10
64636--64699	30	2.1	30	82	5	76	51	1	0	46	1.10
68921--68963	18	2.3	19	80	12	52	48	6	2	41	1.43
70186--70262	22	3.5	22	68	10	66	57	2	0	40	1.13
71002--71044	21	2.0	21	81	0	50	34	4	0	60	1.17
71384--71410	2	13.5	2	100	0	54	51	0	0	48	1.00
72262--72303	2	21.0	2	100	0	84	50	0	0	50	1.00
72574--72608	13	2.8	13	86	4	54	57	0	0	42	0.99
76906--77099	29	6.7	29	67	24	81	41	1	0	56	1.13
76940--76989	16	3.1	16	75	16	50	42	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76988--77050	32	1.9	34	83	6	85	46	1	1	50	1.20
77033--77072	20	2.0	21	90	5	64	32	2	0	65	1.06
77007--77087	34	2.5	32	82	9	94	38	2	1	58	1.20
77038--77108	22	3.0	22	67	25	56	33	1	0	64	1.02
77033--77100	17	4.1	18	69	18	56	33	1	0	64	1.02
77032--77120	26	3.5	26	77	13	105	34	2	1	61	1.15
77759--77810	21	2.5	21	87	3	70	50	0	1	48	1.12
77715--77902	93	2.0	93	82	4	227	44	0	6	48	1.33
78343--78417	31	2.3	31	84	6	87	38	4	4	53	1.39
78412--78447	17	2.1	17	90	10	56	30	0	2	66	1.06
78410--78464	27	2.0	27	86	6	76	29	1	1	67	1.11
78410--78452	22	2.0	21	91	8	70	30	0	2	67	1.03
78738--78790	6	9.3	6	80	19	69	33	0	0	66	0.92
78738--78820	12	7.1	12	77	14	59	38	0	0	61	0.96
78738--78792	18	3.2	18	94	5	96	34	0	0	65	0.93
79436--79493	31	1.9	30	86	10	82	39	0	12	48	1.40
80912--80955	23	1.9	23	86	9	63	47	4	2	45	1.35
81487--81521	3	11.7	3	100	0	70	65	0	0	34	0.93
82523--82551	2	15.0	2	92	7	51	48	0	0	51	1.00
86299--86359	27	2.3	27	75	16	63	45	11	31	11	1.76
87155--87201	23	2.0	24	88	12	71	29	4	2	63	1.25
88028--88096	33	2.1	33	97	0	129	27	17	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90034--90070	18	2.1	18	89	0	56	67	0	0	32	0.91
91131--91157	14	1.9	14	100	0	54	37	7	18	37	1.79
95884--95953	24	2.8	25	80	8	72	40	0	1	58	1.07
100786--100840	28	2.0	28	92	0	92	34	10	7	47	1.66
101382--101425	22	2.0	22	81	0	52	25	25	2	47	1.63
104457--104888	218	2.0	218	91	0	693	31	10	17	40	1.84
106992--107054	23	2.9	21	81	11	56	41	9	0	49	1.35
106992--107058	24	2.7	25	75	17	68	41	10	0	47	1.38
107820--107889	23	3.3	20	75	13	61	1	15	4	78	0.98
107833--107900	25	2.8	25	80	14	63	0	19	4	76	0.95

Tables:   1   2   3   4   5