genome.fa.s284.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold284
Parameters: 2 7 7 80 10 50 1000
Length:  702692

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259680--259759	18	4.4	18	72	19	51	56	0	0	43	0.99
260233--260288	16	3.6	16	79	9	55	66	0	3	30	1.09
260722--260791	32	2.2	32	84	7	88	58	0	1	40	1.07
260764--260815	27	2.0	26	81	11	61	51	0	0	48	1.00
260783--260824	14	3.1	14	83	10	52	54	0	0	45	0.99
261350--261404	28	2.0	28	86	13	78	49	1	0	49	1.11
262139--262168	3	10.0	3	100	0	60	66	0	0	33	0.92
263835--263872	2	19.0	2	100	0	76	0	0	50	50	1.00
264692--264717	2	13.0	2	100	0	52	0	0	50	50	1.00
268489--268525	15	2.5	15	86	0	56	75	0	0	24	0.80
269232--269287	29	1.9	29	85	7	78	62	1	1	33	1.16
272955--273023	30	2.3	30	84	0	84	42	4	17	36	1.69
280570--280623	3	18.0	3	100	0	108	66	0	0	33	0.92
283342--283406	31	2.1	31	91	0	103	32	6	23	38	1.79
283636--283714	24	3.1	24	69	15	68	18	17	12	50	1.77
286901--286996	31	3.1	31	92	0	165	30	7	22	39	1.81
287185--287218	2	17.0	2	93	0	59	47	0	2	50	1.16
305365--305393	10	3.0	10	95	5	51	62	0	17	20	1.33
308101--308130	7	4.3	7	100	0	60	26	0	26	46	1.53
310549--310614	20	3.3	20	70	18	57	48	0	0	51	1.00
310784--310813	13	2.3	13	94	0	51	30	3	6	60	1.39
311324--311365	19	2.3	19	87	4	59	28	2	0	69	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316580--316608	2	14.5	2	100	0	58	51	0	0	48	1.00
317787--317827	20	2.0	22	90	9	68	78	0	17	4	0.93
317854--317918	22	2.8	24	82	15	82	35	0	0	64	0.94
317967--318024	16	3.7	17	77	22	65	27	5	0	67	1.12
317949--318038	46	2.0	46	90	0	144	26	7	1	64	1.28
318484--318516	2	16.5	2	100	0	66	48	0	0	51	1.00
319087--319131	23	2.0	23	90	0	72	26	0	2	71	0.98
319218--319287	26	2.5	28	75	9	72	42	1	0	55	1.08
320263--320308	13	3.6	12	82	11	56	17	0	2	80	0.81
320265--320308	19	2.2	19	88	8	61	15	0	2	81	0.78
322720--322783	27	2.4	28	82	12	73	43	0	0	56	0.99
323153--323180	3	9.3	3	100	0	56	64	0	0	35	0.94
323833--323942	38	2.9	38	78	10	125	32	16	23	27	1.96
328477--328616	38	3.6	39	85	3	167	30	12	28	29	1.93
328478--328641	38	4.3	38	80	6	150	28	12	29	29	1.93
329084--329650	110	5.2	110	84	2	658	33	18	17	30	1.94
329148--329647	219	2.3	220	84	2	639	33	18	17	30	1.94
329827--329856	10	3.1	10	90	9	53	80	0	0	20	0.72
331529--331587	27	2.2	27	81	6	66	45	0	0	54	0.99
332518--332559	21	2.0	21	81	9	50	42	2	0	54	1.13
335975--336021	24	2.0	23	83	4	58	40	2	4	53	1.32
335990--336059	32	2.3	31	83	14	83	41	0	1	57	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336254--336385	23	5.8	22	68	15	81	60	0	0	38	1.02
336281--336349	17	4.1	18	76	14	83	52	0	0	47	1.00
336281--336349	16	4.1	17	75	17	72	52	0	0	47	1.00
336290--336376	35	2.6	34	85	7	106	54	0	0	45	1.00
336290--336355	33	2.0	35	88	8	102	51	0	0	48	1.00
336348--336415	29	2.4	27	81	13	82	63	0	1	35	1.04
336272--336414	15	9.4	16	68	20	67	59	0	0	39	1.03
336904--336929	2	13.0	2	100	0	52	50	0	0	50	1.00
337403--337464	21	3.1	21	70	22	53	50	0	1	48	1.10
338368--338399	12	2.6	13	90	9	50	34	0	0	65	0.93
339115--339155	20	2.0	20	85	0	55	36	0	0	63	0.95
339290--339322	13	2.3	15	90	10	52	51	3	3	42	1.32
339574--339670	39	2.7	33	75	21	88	41	1	0	57	1.05
339600--339663	23	2.7	22	77	22	60	37	1	0	60	1.06
341472--341520	18	2.7	18	81	9	55	48	2	0	48	1.12
342179--342211	10	3.5	10	84	16	52	45	0	6	48	1.27
345456--345488	17	2.0	17	94	5	59	33	0	0	66	0.92
345454--345512	13	4.7	13	72	8	50	35	0	1	62	1.05
347791--347836	22	2.0	23	88	12	69	58	0	0	41	0.98
347958--348013	21	2.6	22	75	8	62	51	0	0	48	1.00
347956--348004	20	2.4	21	82	3	64	55	0	0	44	0.99
348414--348454	12	3.5	12	83	6	57	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348414--348454	11	3.5	11	86	6	55	51	0	0	48	1.00
351879--351928	25	2.0	25	96	0	91	24	34	12	30	1.91
359783--359842	25	2.4	24	78	8	66	35	1	3	60	1.23
359895--359979	35	2.3	35	80	11	100	47	1	0	51	1.08
362762--362914	75	2.1	74	81	11	174	58	0	1	39	1.09
363044--363089	13	3.5	13	82	14	51	52	0	0	47	1.00
363324--363354	14	2.2	14	94	0	53	35	0	3	61	1.12
363712--363767	22	2.6	21	86	8	69	48	1	0	50	1.11
372238--372283	24	2.0	23	82	4	56	36	8	10	43	1.71
374693--374721	2	14.5	2	100	0	58	0	51	0	48	1.00
375689--375713	8	3.1	8	100	0	50	52	12	12	24	1.72
375829--375869	2	20.5	2	100	0	82	48	0	0	51	1.00
378399--378469	16	4.7	15	72	17	67	25	0	4	70	1.05
378471--378518	15	3.4	15	80	11	57	47	2	2	47	1.25
378656--378707	21	2.5	20	80	17	61	36	0	15	48	1.45
378818--379010	99	2.0	97	83	8	248	51	8	2	37	1.45
379202--379236	2	17.5	2	93	0	61	51	0	0	48	1.00
384673--384714	19	2.2	19	100	0	84	54	0	0	45	0.99
384888--384926	19	2.1	19	85	0	51	56	10	2	30	1.46
385855--385882	2	14.0	2	100	0	56	50	0	0	50	1.00
386505--386588	30	2.8	29	77	15	82	51	0	0	48	1.00
386520--386597	23	3.5	23	81	8	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388808--388878	26	2.7	26	100	0	142	35	15	2	46	1.61
392729--392777	2	25.0	2	95	4	91	51	0	0	48	1.00
393810--393857	11	3.8	12	78	15	53	52	6	0	41	1.27
394202--394245	23	1.9	23	81	9	54	56	2	0	40	1.11
394648--394700	26	2.1	26	82	10	65	62	0	1	35	1.06
394978--395011	3	11.3	3	100	0	68	32	0	0	67	0.91
395079--395149	31	2.3	31	75	4	72	53	1	1	43	1.18
396568--396652	30	2.8	30	78	3	91	50	5	3	40	1.44
398245--398285	18	2.3	18	86	0	55	39	7	2	51	1.43
398733--398926	102	1.9	101	80	8	223	39	2	5	53	1.35
398741--398899	42	3.9	41	78	12	141	38	1	5	54	1.33
398782--398917	21	6.8	20	77	14	104	36	1	4	58	1.27
398782--398929	11	14.5	11	69	18	63	36	1	4	57	1.28
399033--399089	21	2.8	20	82	15	64	43	0	3	52	1.18
399057--399099	10	4.6	9	85	8	50	44	0	0	55	0.99
399052--399089	10	3.7	10	86	13	51	44	0	0	55	0.99
399758--399805	23	2.1	22	81	11	53	54	4	2	39	1.32
399831--399896	33	2.0	33	85	2	89	56	1	1	40	1.18
400450--400513	25	2.8	22	80	17	76	23	3	1	71	1.08
400479--400521	22	2.0	22	90	0	68	25	2	0	72	0.97
400508--400544	19	1.9	19	94	0	65	32	8	2	56	1.43
400515--400558	19	2.3	19	88	4	61	34	6	6	52	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407821--407880	19	3.0	20	75	20	63	53	0	0	46	1.00
407826--407888	20	3.1	19	79	9	63	52	0	0	47	1.00
407824--407889	21	3.3	19	81	12	71	50	0	0	50	1.00
408769--408796	14	2.0	14	100	0	56	50	7	7	35	1.57
418436--418481	2	23.0	2	100	0	92	50	0	0	50	1.00
419633--419675	17	2.6	16	78	7	50	55	0	2	41	1.12
420853--420887	2	18.0	2	88	5	54	48	2	0	48	1.16
421486--421515	10	3.0	10	100	0	60	60	0	10	30	1.30
421759--421797	19	2.1	19	85	0	51	23	0	20	56	1.42
422081--422118	16	2.4	16	82	8	51	55	0	0	44	0.99

Tables:   1   2   3   4   5