genome.fa.s284.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold284
Parameters: 2 7 7 80 10 50 1000
Length:  702692

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549938--549967	2	15.0	2	100	0	60	50	0	0	50	1.00
550622--550691	30	2.3	31	85	2	88	51	7	0	41	1.29
550324--550863	269	2.0	271	97	0	1012	36	15	4	43	1.66
551191--551218	2	14.0	2	100	0	56	50	0	0	50	1.00
551437--551502	33	2.0	33	84	0	87	48	6	3	42	1.43
552920--552955	17	2.1	17	100	0	72	52	0	33	13	1.41
554247--554298	21	2.5	22	75	6	54	53	1	3	40	1.30
558763--558821	22	2.6	22	81	7	66	66	3	0	30	1.08
558878--558913	16	2.2	17	90	5	56	58	2	0	38	1.13
558875--558922	22	2.2	21	81	3	51	60	2	0	37	1.09
559588--559631	3	15.0	3	95	4	81	34	0	0	65	0.93
560026--560065	19	2.0	20	85	4	55	57	0	0	42	0.98
560558--560602	3	15.0	3	90	0	72	68	0	2	28	1.01
562054--562094	3	13.7	3	100	0	82	68	0	0	31	0.90
562214--562390	89	2.0	89	97	0	336	32	24	10	32	1.90
565645--565697	27	1.9	27	85	11	72	50	0	1	47	1.12
567773--567824	24	2.2	22	86	13	68	50	3	17	28	1.64
567783--567830	24	2.0	24	100	0	96	45	4	16	33	1.67
569674--569711	19	2.0	19	89	0	58	36	21	13	28	1.91
569683--569744	33	1.9	33	87	9	92	41	17	11	29	1.84
572846--572926	26	3.0	27	73	12	67	44	2	0	53	1.14
572913--572990	31	2.5	32	83	6	97	69	0	1	29	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572909--572994	18	4.8	18	75	13	63	68	0	1	30	0.97
574289--574386	30	3.3	29	84	7	124	33	4	25	36	1.75
574301--574390	30	3.0	30	90	0	135	33	5	27	33	1.80
577288--577634	178	2.0	177	98	0	667	24	13	11	50	1.75
580691--580737	22	2.1	22	92	0	76	48	10	19	21	1.78
582108--582176	20	3.4	19	74	18	59	49	0	2	47	1.16
582127--582168	22	1.9	22	85	9	59	47	0	2	50	1.14
582541--582608	34	2.0	34	82	0	82	36	1	4	57	1.28
583037--583084	23	2.2	22	79	17	55	58	0	2	39	1.10
583042--583085	23	1.9	23	90	9	72	59	0	0	40	0.98
583653--583689	2	18.5	2	94	0	65	0	45	0	54	1.00
583729--583758	9	3.2	9	95	4	51	90	0	10	0	0.47
583729--583758	10	3.1	10	90	9	53	90	0	10	0	0.47
587079--587106	2	14.0	2	100	0	56	0	0	50	50	1.00
593015--593112	22	4.3	22	77	16	85	50	4	1	44	1.27
595747--595786	2	20.0	2	100	0	80	50	0	0	50	1.00
596178--596212	17	2.1	17	89	10	54	51	0	0	48	1.00
596172--596220	17	3.1	16	73	26	50	59	0	0	40	0.98
597941--597971	11	2.8	11	95	0	53	80	0	0	19	0.71
598258--598298	21	1.9	21	85	5	55	39	9	4	46	1.58
598874--598902	2	15.0	2	92	7	51	48	0	0	51	1.00
598980--599033	23	2.2	25	81	12	69	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598980--599027	12	4.1	12	82	15	64	64	0	0	35	0.94
599161--599208	17	3.0	17	77	16	50	54	0	0	45	0.99
599227--599316	21	4.2	21	66	16	58	58	4	1	35	1.25
599197--599317	65	1.9	64	84	1	161	59	5	1	33	1.31
600146--600189	10	4.2	11	77	11	56	68	0	0	31	0.90
600133--600190	21	2.8	21	84	2	64	63	0	0	36	0.94
600131--600178	11	4.4	11	78	7	53	60	0	0	39	0.97
600151--600191	20	2.0	21	90	4	66	68	0	0	31	0.90
600487--600561	19	4.2	17	69	19	55	58	0	1	40	1.06
601201--601226	3	8.7	3	100	0	52	34	0	0	65	0.93
606610--606871	82	3.2	81	84	4	303	29	12	12	44	1.80
606610--606888	41	6.9	40	84	3	263	30	12	12	44	1.79
606651--606888	80	2.9	80	84	2	296	31	12	12	44	1.78
606996--607040	23	2.0	23	86	8	65	4	40	0	55	1.20
606996--607029	2	17.5	2	87	6	52	0	44	0	55	0.99
608650--608693	22	2.0	21	86	4	61	45	22	6	25	1.77
609128--609173	3	15.3	3	100	0	92	67	0	0	32	0.91
609412--609466	19	2.7	19	78	15	56	34	0	0	65	0.93
609420--609466	11	4.5	10	82	17	60	31	0	0	68	0.90
609420--609467	21	2.3	20	83	16	62	31	0	0	68	0.90
609416--609470	27	2.1	26	90	6	85	34	0	0	65	0.93
609424--609481	27	2.1	27	84	6	73	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612141--612255	59	1.9	59	92	0	194	31	19	9	40	1.83
618975--619149	51	3.4	51	78	6	201	50	16	5	28	1.66
622322--622368	21	2.2	21	88	0	67	38	6	21	34	1.79
622331--622374	21	2.1	21	86	0	61	38	6	15	38	1.75
625886--625914	14	2.0	15	93	6	51	24	27	0	48	1.51
628760--628808	17	3.0	17	77	16	59	22	0	4	73	1.00
637215--637244	16	1.9	15	93	6	51	63	0	0	36	0.95
637874--637914	21	2.0	21	85	0	55	41	0	0	58	0.98
639695--639777	16	5.1	16	78	8	78	56	3	0	39	1.17
642069--642136	15	5.1	13	86	11	77	32	0	0	67	0.91
642074--642134	3	21.0	3	93	6	108	32	0	0	67	0.91
654510--654569	31	1.9	32	93	3	104	43	6	31	18	1.76
663360--663419	2	30.0	2	100	0	120	50	0	0	50	1.00
669248--669291	18	2.4	18	80	0	52	59	4	6	29	1.44
669273--669343	33	2.2	32	82	12	83	50	5	1	42	1.34
670780--670883	32	3.4	32	65	22	87	55	5	0	38	1.24
670787--670910	59	2.1	58	92	3	203	56	5	0	37	1.23
670787--670926	59	2.4	59	86	5	160	57	5	0	36	1.22
671495--671525	12	2.6	12	94	0	53	16	0	0	83	0.64
672180--672231	17	2.8	19	77	11	72	67	5	5	21	1.33
672680--672723	23	1.9	23	85	0	61	75	6	0	18	1.02
673207--673264	22	2.8	22	84	10	77	36	12	10	41	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675641--675795	79	2.0	80	80	3	179	33	22	10	33	1.88
675730--675844	51	2.3	51	89	0	176	33	20	8	38	1.83
677512--677538	2	13.5	2	100	0	54	0	51	0	48	1.00
681192--681224	2	16.5	2	100	0	66	48	0	0	51	1.00
681338--681365	3	9.3	3	100	0	56	32	0	0	67	0.91
688895--688929	16	2.1	17	89	5	54	82	0	17	0	0.66
688901--688930	10	3.0	10	95	0	51	86	0	13	0	0.57
688978--689008	16	1.9	16	93	0	53	51	22	3	22	1.62
696667--697176	27	18.7	27	88	2	655	23	32	13	30	1.93
696667--697176	164	3.1	162	89	2	752	23	32	13	30	1.93
696667--697176	191	2.7	192	91	1	819	23	32	13	30	1.93
699841--699913	33	2.2	33	92	7	130	41	24	8	26	1.83

Tables:   1   2   3   4   5

The End!