genome.fa.s284.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold284
Parameters: 2 7 7 80 10 50 1000
Length:  702692

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422091--422136	25	1.9	23	82	8	56	58	0	0	41	0.98
423669--423719	17	3.2	16	83	13	61	49	0	1	49	1.12
423676--423733	23	2.6	22	79	12	57	43	0	3	53	1.17
423894--423937	22	2.0	21	86	4	61	40	2	2	54	1.25
425716--425743	2	14.0	2	100	0	56	50	0	50	0	1.00
426101--426125	2	12.5	2	100	0	50	48	0	0	52	1.00
429195--429249	22	2.5	23	85	5	78	45	0	0	54	0.99
429667--429705	16	2.5	15	88	12	60	33	0	0	66	0.92
429747--429783	14	2.6	14	91	0	56	37	0	13	48	1.43
430409--430445	18	2.2	18	85	9	51	32	2	0	64	1.07
431601--431660	18	3.5	17	75	8	50	55	0	0	45	0.99
432138--432162	3	8.3	3	100	0	50	32	0	0	68	0.90
432356--432385	6	5.0	6	95	0	51	66	3	0	30	1.07
432281--432440	87	1.8	87	89	0	248	55	13	9	22	1.66
432782--432840	21	3.0	21	80	9	61	49	0	0	50	1.00
432802--432838	18	1.9	19	89	10	58	56	0	0	43	0.99
432907--432944	18	2.1	19	90	5	60	47	0	2	50	1.15
432916--432965	17	2.8	18	82	11	59	54	0	0	46	1.00
433212--433239	4	7.0	4	100	0	56	25	0	0	75	0.81
433643--433775	72	1.9	71	83	12	175	58	2	1	37	1.20
444587--444625	2	19.5	2	100	0	78	48	0	0	51	1.00
444740--445139	208	1.9	210	83	9	530	40	9	4	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445674--445719	17	2.7	17	80	12	58	47	0	0	52	1.00
449817--450184	161	2.2	166	86	4	505	33	14	10	40	1.81
452134--452179	24	2.0	23	86	4	65	34	0	0	65	0.93
452833--452877	20	2.3	20	88	3	65	22	0	2	75	0.91
453169--453193	2	12.5	2	100	0	50	52	0	0	48	1.00
453699--453751	24	2.2	24	82	0	70	7	22	7	62	1.47
458970--459005	2	18.0	2	100	0	72	50	0	0	50	1.00
459433--459495	10	5.6	11	69	23	51	50	1	0	47	1.10
459612--459701	29	3.1	28	77	16	85	56	2	0	41	1.11
459717--459762	22	2.0	24	87	8	69	45	4	0	50	1.21
459753--459815	13	4.9	13	70	18	51	49	0	1	49	1.10
459926--459979	27	2.0	27	100	0	108	51	0	7	40	1.30
459926--459971	14	3.4	14	77	17	60	54	0	6	39	1.26
460405--460462	21	2.8	21	79	10	64	46	0	0	53	1.00
462774--462815	21	2.0	21	81	9	50	52	2	0	45	1.13
462805--462962	75	2.1	74	90	2	246	53	4	5	37	1.43
462941--462992	26	2.0	25	88	3	77	51	0	1	46	1.12
470099--470130	2	16.0	2	93	0	55	46	0	3	50	1.17
470613--470646	16	2.1	17	94	5	61	47	0	0	52	1.00
470697--470751	20	2.8	20	78	13	69	43	0	0	56	0.99
472568--472602	2	18.0	2	88	5	54	54	0	0	45	0.99
472795--472851	20	3.0	20	73	19	59	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472786--472828	22	1.9	23	86	13	63	55	2	0	41	1.12
477524--477566	19	2.2	20	84	8	54	67	6	2	23	1.27
477884--477919	2	18.0	2	100	0	72	50	0	0	50	1.00
479984--480015	3	11.0	3	93	6	57	68	0	31	0	0.90
480252--480289	20	2.0	20	89	5	60	78	2	10	7	1.04
480266--480305	7	5.6	7	85	14	55	85	0	5	10	0.75
480313--480348	3	11.7	3	88	5	54	27	0	5	66	1.13
481575--481689	56	2.1	56	94	0	203	36	9	20	33	1.85
482032--482056	13	1.9	13	100	0	50	32	0	0	68	0.90
485686--485732	14	3.4	14	74	8	51	55	0	0	44	0.99
485708--485741	14	2.4	14	85	0	50	44	0	2	52	1.16
486083--486132	3	16.7	3	100	0	100	32	34	0	34	1.58
486532--486574	22	1.9	22	85	4	59	62	0	0	37	0.95
489023--489083	27	2.2	27	80	8	70	59	1	1	37	1.17
489917--489954	10	3.4	11	85	14	51	42	0	0	57	0.98
490240--490301	12	5.2	12	81	14	56	64	0	4	30	1.14
490259--490338	9	8.8	9	70	17	58	62	0	0	37	0.95
490247--490421	11	14.1	12	68	20	85	60	1	0	37	1.08
490259--490412	15	11.1	14	67	24	62	59	0	0	39	1.02
490391--490426	19	1.9	18	88	5	54	69	2	0	27	1.02
491420--491456	7	4.9	8	80	12	51	51	0	0	48	1.00
492804--492854	2	25.5	2	91	0	84	50	3	0	45	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493209--493252	23	1.9	23	86	9	63	63	0	0	36	0.95
496811--496856	19	2.3	20	81	7	58	30	2	0	67	1.03
496954--497030	34	2.2	37	79	11	90	31	1	2	64	1.15
497224--497322	27	3.7	27	71	20	82	44	0	0	55	0.99
499486--499531	2	24.0	2	80	8	51	52	0	0	47	1.00
499498--499536	20	2.0	20	89	0	60	56	0	0	43	0.99
509741--509772	16	2.0	16	93	0	55	40	0	18	40	1.51
510702--510744	3	14.7	3	92	4	70	62	0	2	34	1.08
510702--510753	6	8.1	7	87	12	53	59	0	1	38	1.08
511283--511331	20	2.5	20	83	6	57	42	2	4	51	1.32
511354--511394	14	2.8	15	82	14	50	41	2	0	56	1.13
511685--511713	2	14.5	2	100	0	58	0	48	0	51	1.00
511713--511739	2	13.5	2	100	0	54	48	0	0	51	1.00
514018--514044	1	27.0	1	100	0	54	100	0	0	0	0.00
522538--522585	17	2.8	16	75	12	51	35	0	0	64	0.94
522926--522959	3	11.3	3	100	0	68	32	0	0	67	0.91
523298--523364	36	1.9	34	85	11	91	49	2	0	47	1.16
523629--523733	41	2.6	40	76	13	99	40	0	0	57	1.12
523668--523732	12	5.6	11	72	16	60	36	1	0	61	1.05
523700--523756	17	3.6	16	76	9	62	43	0	0	56	0.99
524132--524156	3	8.3	3	100	0	50	32	0	0	68	0.90
524212--524254	14	3.0	14	79	3	50	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524708--524796	15	5.6	15	69	23	58	46	1	2	50	1.21
524704--524787	37	2.3	37	97	0	159	45	1	2	51	1.22
524724--524765	22	2.0	21	90	4	66	45	0	2	52	1.13
525959--525993	14	2.6	13	82	8	52	42	0	2	54	1.15
526085--526165	12	6.3	13	72	11	51	41	1	0	56	1.07
526117--526167	18	2.7	20	79	20	72	41	3	0	54	1.19
526117--526173	18	3.1	19	76	19	66	42	3	0	54	1.17
526876--526911	16	2.2	16	90	5	54	61	13	0	25	1.33
526912--526954	19	2.5	17	85	14	54	60	0	0	39	0.97
526912--526976	17	3.8	18	79	15	59	58	0	0	41	0.98
528058--528120	22	2.9	22	76	6	67	36	0	6	57	1.24
529212--529264	23	2.4	22	84	12	72	60	1	0	37	1.08
529223--529279	20	2.9	20	81	2	62	61	1	1	35	1.17
529215--529279	23	3.1	20	82	10	60	61	1	1	35	1.15
529518--529564	20	2.4	20	79	10	53	40	2	0	57	1.11
532402--532442	2	20.5	2	100	0	82	48	0	0	51	1.00
532899--532945	24	2.0	24	91	0	76	48	6	10	34	1.63
538180--538218	20	2.0	20	84	0	51	38	5	2	53	1.37
539259--539381	44	2.8	45	74	10	135	60	0	0	39	1.03
539267--539389	28	4.4	26	72	14	95	60	0	0	38	1.02
539322--539389	9	7.4	9	77	12	68	64	0	0	35	0.94
539238--539404	19	9.3	19	70	14	97	59	0	0	39	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539244--539389	17	8.1	20	70	17	90	61	0	0	36	1.06
541603--541635	2	16.5	2	100	0	66	0	48	0	51	1.00
542576--542605	2	15.0	2	92	0	51	0	53	0	46	1.00
544676--544744	33	2.1	33	83	8	86	62	1	0	36	1.04
545585--545609	2	12.5	2	100	0	50	52	0	0	48	1.00
545609--545641	2	16.5	2	100	0	66	51	0	48	0	1.00
546346--546397	17	2.9	17	81	13	61	40	0	0	59	0.97
546862--546896	2	17.5	2	100	0	70	48	0	0	51	1.00
547596--547641	22	2.0	22	84	12	58	47	2	2	47	1.26
548074--548105	2	16.0	2	100	0	64	50	0	0	50	1.00

Tables:   1   2   3   4   5