genome.fa.s287.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold287
Parameters: 2 7 7 80 10 50 1000
Length:  796744

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310927--311200	112	2.5	111	80	8	276	39	13	14	33	1.85
312172--312218	12	4.2	11	79	12	51	2	10	2	85	0.78
312172--312223	20	2.5	21	84	6	61	3	9	1	84	0.82
312172--312224	21	2.5	21	78	6	54	3	9	1	84	0.81
315494--315793	153	2.0	152	79	9	326	41	18	13	27	1.87
326819--326936	20	5.8	20	78	13	125	38	11	16	32	1.86
326825--326944	41	3.0	41	87	8	158	37	12	17	32	1.87
333395--333430	19	1.9	19	88	5	56	55	2	0	41	1.14
334350--334389	16	2.5	16	87	0	53	47	12	2	37	1.55
334790--334886	24	4.2	24	74	11	87	47	3	2	47	1.29
334835--334886	23	2.2	24	86	10	72	51	0	0	48	1.00
335427--335472	24	2.0	23	82	4	56	43	0	6	50	1.28
336595--336646	18	2.8	20	81	18	67	40	0	0	59	0.97
337510--337549	21	1.9	21	85	10	55	30	15	2	52	1.55
341897--341930	16	2.2	16	89	5	52	70	5	23	0	1.09
343390--343443	25	2.2	25	86	6	74	37	0	1	61	1.07
345145--345178	16	2.1	16	89	10	52	14	11	2	70	1.27
348577--348602	2	13.0	2	100	0	52	50	0	0	50	1.00
349456--349499	21	2.1	21	83	8	54	75	6	9	9	1.20
361480--361536	21	2.6	23	74	17	59	49	5	3	42	1.42
361640--361679	21	1.9	21	85	10	55	55	0	5	40	1.22
361792--361829	2	19.0	2	94	0	67	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362683--362711	8	3.8	8	90	9	51	0	10	0	89	0.48
362859--362891	3	11.0	3	100	0	66	0	33	0	66	0.92
364485--364525	20	2.1	20	86	4	57	26	0	4	68	1.10
365459--366012	274	2.0	274	96	1	1013	40	11	13	35	1.80
365977--366001	2	12.5	2	100	0	50	0	48	0	52	1.00
366377--366454	34	2.4	34	95	4	142	70	0	19	10	1.15
366377--366463	36	2.5	34	92	3	138	67	0	20	11	1.21
367620--367671	22	2.4	22	86	0	77	15	28	11	44	1.81
368905--368965	2	30.5	2	100	0	122	49	0	0	50	1.00
369438--369482	23	2.0	23	83	8	58	44	2	0	53	1.13
369440--369512	38	1.9	37	82	17	89	46	2	0	50	1.15
369574--369650	37	2.1	37	90	2	120	50	7	9	32	1.63
369813--369841	2	14.5	2	100	0	58	51	0	0	48	1.00
370085--370116	8	4.1	8	92	8	57	87	0	0	12	0.54
370084--370116	15	2.2	15	100	0	66	84	0	0	15	0.61
371264--371304	17	2.4	17	95	0	73	29	0	36	34	1.58
371540--371573	14	2.3	15	90	5	52	50	5	5	38	1.51
371945--371988	22	1.9	24	86	9	65	43	2	0	54	1.12
371966--372021	26	2.1	28	83	6	71	48	1	1	48	1.22
372593--372661	31	2.2	31	92	2	111	42	26	7	24	1.80
373418--373468	24	2.1	25	82	10	61	52	1	3	41	1.31
373554--373579	13	2.0	13	100	0	52	84	0	15	0	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374835--374873	2	20.0	2	89	5	62	51	0	0	48	1.00
385443--387839	27	87.7	27	80	5	2360	25	31	13	30	1.94
385443--387861	55	44.2	55	82	4	2362	25	31	13	29	1.94
387804--388705	30	30.3	28	75	13	505	30	29	16	23	1.96
387870--388656	88	8.8	90	78	8	482	31	30	15	22	1.95
387901--388656	178	4.2	181	77	10	530	31	30	15	22	1.95
389222--389260	16	2.4	16	82	4	51	82	2	7	7	0.94
396044--396096	20	2.6	21	81	3	63	33	15	9	41	1.79
397081--397129	20	2.5	19	83	9	62	81	8	0	10	0.87
397081--397154	22	3.4	20	78	15	67	77	8	1	13	1.06
398052--398108	24	2.4	25	76	8	64	47	10	33	8	1.69
398786--398820	16	2.2	16	90	10	54	80	0	0	20	0.72
403330--403355	13	2.0	13	100	0	52	30	23	15	30	1.95
405288--405326	20	2.1	18	85	9	51	23	12	12	51	1.74
406226--406282	10	5.5	10	74	14	53	82	0	14	3	0.80
406226--406285	12	5.2	11	74	18	59	83	0	13	3	0.77
406236--406285	18	2.7	18	79	14	57	82	0	14	4	0.82
406402--406951	90	6.1	90	84	2	626	27	26	16	29	1.97
407186--407279	36	2.6	36	81	1	100	20	21	10	47	1.79
407198--407279	36	2.3	36	82	0	101	20	21	10	46	1.81
408086--408111	13	2.0	13	100	0	52	30	15	15	38	1.88
410654--410692	13	3.0	13	96	0	69	41	15	12	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414604--414648	21	2.1	21	84	8	56	22	20	4	53	1.63
417593--420827	85	38.2	84	72	6	1068	18	26	17	37	1.93
417548--420827	42	77.5	42	71	9	1285	18	26	17	37	1.93
417551--420827	127	25.8	127	79	4	2423	18	26	17	37	1.93
417541--417951	211	1.9	212	81	5	492	17	27	18	36	1.93
421008--421406	42	9.5	43	71	7	221	21	28	18	32	1.96
421052--421406	84	4.2	84	82	2	338	20	29	17	32	1.96
421637--421824	44	4.3	43	74	7	166	12	31	18	37	1.87
421661--421839	86	2.1	85	83	2	241	14	29	16	39	1.89
422388--422466	8	9.2	8	78	15	79	72	15	0	12	1.13
422392--422466	25	2.9	25	84	11	89	73	14	0	12	1.10
422388--422468	17	4.7	17	80	11	94	71	14	0	13	1.14
422427--422496	20	3.6	19	78	12	63	72	14	1	11	1.18
422484--422517	9	3.8	9	96	0	59	67	8	2	20	1.31
425850--425889	21	2.0	21	95	5	73	15	15	17	52	1.75
432086--432692	156	3.9	154	79	4	589	41	17	14	25	1.88
432086--432674	312	1.9	308	80	5	695	42	17	14	25	1.88
434158--434679	165	3.2	166	85	3	660	43	15	9	32	1.78
441179--441562	106	3.7	105	77	5	334	47	12	19	20	1.82
441596--441800	105	2.0	104	84	6	272	44	9	23	22	1.82
441345--441815	249	1.9	248	83	4	608	45	9	22	22	1.81
441960--442056	51	1.9	51	84	0	131	48	12	18	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442008--442514	67	7.6	65	75	7	351	45	14	21	19	1.85
442028--442514	134	3.6	133	78	5	403	45	14	21	19	1.85
442011--442514	66	7.6	65	77	6	402	45	13	21	19	1.85
442060--442524	200	2.3	201	81	6	527	45	14	21	19	1.85
444577--444604	3	9.3	3	100	0	56	67	0	0	32	0.91
444848--444896	27	1.9	26	88	12	75	51	6	0	42	1.27
445224--445272	24	2.0	24	84	7	64	55	4	6	34	1.44
449213--449270	26	2.2	26	84	0	71	56	8	10	24	1.60
450169--450214	12	3.6	12	78	16	56	39	13	4	43	1.63
454916--454966	12	3.9	12	78	16	57	39	11	5	43	1.66
455846--455987	41	3.4	40	83	13	178	55	2	2	38	1.29
455828--455987	85	1.9	86	92	3	270	54	3	2	40	1.30
455830--456002	46	4.0	45	83	13	236	55	2	2	39	1.27
456423--456475	26	2.0	26	82	7	63	41	20	7	30	1.80
458951--459000	19	2.8	18	76	8	57	62	0	0	38	0.96
458978--459028	15	3.6	14	79	15	61	52	1	0	45	1.12
459250--459307	28	2.1	27	81	12	64	56	0	0	43	0.99
461371--461405	3	11.7	3	100	0	70	34	0	0	65	0.93
461798--461839	22	1.9	22	85	9	59	64	4	4	26	1.33
462644--462690	2	23.5	2	100	0	94	51	0	0	48	1.00
463553--463791	122	2.0	121	94	2	426	52	3	4	39	1.39
463736--463830	49	1.9	49	86	0	136	60	7	6	26	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463974--464015	2	21.0	2	100	0	84	50	0	0	50	1.00
464766--464791	4	6.5	4	100	0	52	50	0	0	50	1.00
464800--464840	11	3.7	11	84	12	57	51	0	2	46	1.14
470056--470091	2	18.0	2	100	0	72	50	0	0	50	1.00
475362--475431	4	18.0	4	71	11	56	75	0	22	1	0.88
475365--475444	15	5.2	16	73	13	62	76	0	21	2	0.91
475365--475444	23	3.5	23	74	5	72	76	0	21	2	0.91
475495--475543	19	2.7	18	75	9	55	38	0	0	61	0.96
475468--476089	342	1.8	341	85	3	883	33	4	6	54	1.48
476600--476673	11	7.1	11	73	11	57	31	1	2	64	1.15

Tables:   1   2   3   4   5