genome.fa.s287.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold287
Parameters: 2 7 7 80 10 50 1000
Length:  796744

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 589 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476608--476673	27	2.6	24	81	15	80	31	1	1	65	1.11
476603--476699	27	3.6	27	73	18	78	28	2	4	64	1.23
476756--476796	17	2.6	16	81	11	57	43	0	0	56	0.99
477742--477782	3	13.0	3	90	10	64	31	4	0	63	1.15
477739--477778	14	3.0	14	92	7	66	30	10	0	60	1.30
478791--478829	11	3.5	11	89	3	60	5	10	0	84	0.76
479333--479389	22	2.5	22	83	16	64	70	3	1	24	1.13
480329--480405	5	14.6	5	80	9	64	45	0	0	54	0.99
480832--480867	17	2.1	17	89	0	54	55	0	0	44	0.99
481189--481250	15	4.0	15	75	21	56	45	0	1	53	1.10
481184--481229	18	2.5	19	73	20	53	45	0	2	52	1.13
481237--481277	12	3.4	12	83	12	57	29	0	2	68	1.03
482061--482202	73	1.9	73	83	7	180	36	1	9	52	1.42
482308--483941	74	22.2	72	68	17	484	31	1	13	53	1.48
482742--483001	138	1.9	136	82	6	326	31	1	13	54	1.46
481992--484054	442	4.7	443	83	6	2339	32	1	12	53	1.49
483204--483527	140	2.3	143	80	7	358	31	1	14	53	1.49
483646--483911	145	1.8	147	82	5	351	30	1	11	56	1.42
486929--486972	20	2.2	20	84	8	54	25	9	4	61	1.45
493528--493600	21	3.7	20	75	21	82	39	15	16	28	1.89
493585--493612	13	2.2	13	100	0	56	39	17	14	28	1.89
493528--493612	38	2.4	36	81	18	106	38	15	16	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493663--493725	32	2.0	32	93	0	108	36	12	12	38	1.82
494036--494217	89	2.1	87	81	5	204	34	20	5	40	1.76
494297--494440	39	3.7	38	77	7	128	40	17	4	36	1.71
495528--495562	11	3.3	11	92	4	54	34	0	2	62	1.10
495637--495670	15	2.4	14	85	9	50	26	11	5	55	1.58
499955--500000	19	2.3	20	85	10	60	60	0	0	39	0.97
500170--500225	16	3.3	18	73	16	57	48	0	0	51	1.00
500171--500228	24	2.5	24	78	10	68	48	0	0	51	1.00
501203--501238	18	2.0	18	89	10	56	50	2	2	44	1.31
501779--501808	16	1.9	15	93	6	51	26	16	3	53	1.59
502260--502313	16	3.4	16	89	0	81	5	20	33	40	1.76
503965--503989	11	2.3	11	100	0	50	92	0	8	0	0.40
509299--510096	27	29.1	27	84	4	963	26	32	14	27	1.94
509299--510096	165	4.9	163	86	3	949	26	32	14	27	1.94
509299--510138	274	3.1	274	87	2	1123	26	32	14	26	1.94
510021--510814	28	27.2	28	82	6	626	28	30	17	23	1.97
510021--510814	58	13.6	58	82	7	615	28	30	17	23	1.97
509299--510166	247	3.5	243	82	6	913	26	32	14	26	1.94
510048--510814	86	8.7	87	79	11	653	29	29	17	23	1.97
510268--510501	32	7.4	32	83	3	287	30	28	19	20	1.97
510801--510871	36	2.0	35	88	2	106	28	26	12	32	1.93
511873--511927	20	2.8	20	97	0	101	38	14	14	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519786--519848	28	2.4	25	76	10	63	25	1	1	71	1.04
519810--519844	9	4.0	9	85	7	54	31	0	0	68	0.90
519800--519892	30	3.2	29	72	14	86	30	1	2	66	1.10
519813--519848	17	2.1	17	94	0	63	25	0	0	75	0.81
525283--525336	24	2.2	24	77	6	56	48	7	3	40	1.49
526932--526965	17	1.9	18	88	5	52	50	0	0	50	1.00
527565--527628	20	3.7	18	74	25	66	43	15	12	28	1.83
527583--527608	13	2.0	13	100	0	52	38	15	15	30	1.88
527565--527628	32	2.0	33	93	3	112	43	15	12	28	1.83
532600--532674	20	3.8	20	76	0	78	34	12	12	41	1.79
532600--532677	40	2.0	39	84	2	102	34	11	12	41	1.80
533587--533641	22	2.5	22	100	0	110	18	10	9	61	1.54
533587--533648	22	2.9	21	90	4	63	20	11	9	58	1.61
537334--537371	13	2.9	13	96	0	67	34	18	15	31	1.92
537492--537537	21	2.2	20	81	11	58	32	19	4	43	1.71
538991--539033	23	2.0	21	81	9	50	13	9	16	60	1.58
539914--539977	20	3.6	19	72	25	68	45	15	10	28	1.80
539914--539975	19	3.6	18	71	26	53	45	14	11	29	1.80
539916--539977	32	1.9	33	93	3	108	46	16	9	27	1.78
540739--540785	22	2.2	22	88	3	69	48	2	0	48	1.13
550571--550595	2	12.5	2	100	0	50	48	0	52	0	1.00
552759--552861	52	2.0	52	84	0	134	31	21	14	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555043--555088	2	23.0	2	95	0	83	47	50	2	0	1.13
557414--557448	3	11.7	3	100	0	70	34	0	0	65	0.93
557510--557585	36	2.1	35	83	7	91	35	2	3	57	1.31
558580--558628	3	16.3	3	100	0	98	67	0	32	0	0.91
560518--560553	4	9.0	4	100	0	72	25	25	0	50	1.50
563949--563979	16	1.9	16	93	0	53	58	0	0	41	0.98
566614--566832	90	2.4	90	96	0	393	26	10	14	47	1.77
566797--566865	33	2.1	33	100	0	138	17	8	8	65	1.45
566955--567113	80	2.0	81	96	1	293	38	9	15	36	1.80
568309--568357	18	2.5	20	87	9	75	48	2	0	48	1.12
569763--569798	2	18.0	2	100	0	72	50	0	0	50	1.00
574836--574876	16	2.5	16	88	11	57	34	2	0	63	1.08
574850--574895	23	2.1	22	88	8	67	34	0	0	65	0.93
576920--576968	3	16.3	3	100	0	98	32	0	0	67	0.91
584163--584332	86	2.0	86	92	0	286	32	11	10	45	1.74
588792--588873	2	41.5	2	74	11	62	48	2	6	42	1.41
593833--593888	18	3.1	18	79	7	51	42	0	1	55	1.10
593851--594037	99	1.9	94	89	5	284	52	8	1	37	1.39
596667--596707	5	8.2	5	97	0	55	0	53	0	46	1.00
596664--596707	15	2.9	15	89	0	61	0	50	0	50	1.00
611022--611085	20	3.5	20	72	27	79	35	17	12	34	1.87
611020--611069	13	4.3	13	72	27	58	38	18	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611018--611103	33	2.5	34	92	5	147	36	18	13	31	1.90
611136--611187	19	2.7	19	78	3	59	36	15	17	30	1.91
611172--611198	13	2.1	13	100	0	54	40	14	14	29	1.86
611184--611236	20	2.7	20	100	0	106	43	15	15	26	1.85
612133--612199	33	2.0	33	82	0	80	26	14	29	28	1.96
613504--613550	19	2.3	21	71	10	53	38	0	23	38	1.55
618283--618380	36	2.9	34	81	11	114	30	24	12	32	1.92
618811--618848	20	1.9	20	100	0	76	36	21	10	31	1.87
618814--618860	20	2.3	20	88	0	67	36	19	8	36	1.82
619084--619124	20	2.0	21	90	9	66	39	7	7	46	1.60
620731--620799	33	2.1	32	86	7	95	39	10	13	37	1.78
621885--621914	13	2.3	13	94	0	51	33	13	20	33	1.91
621864--621930	33	2.0	33	88	5	100	32	19	14	32	1.92
624766--624827	28	2.2	29	97	2	117	41	20	11	25	1.86
625961--625997	16	2.3	16	85	0	56	32	10	0	56	1.34
628608--628653	22	2.0	22	83	8	56	19	8	15	56	1.65
630058--630083	13	2.0	13	100	0	52	30	15	15	38	1.88
637947--638042	1	96.0	1	76	0	75	86	5	8	0	0.70
637948--638040	34	2.8	34	89	10	147	86	5	8	0	0.72
637947--638042	36	2.7	34	83	15	131	86	5	8	0	0.70
642715--642753	13	3.0	13	100	0	78	38	15	15	30	1.88
642739--642817	20	3.7	20	76	15	77	44	15	13	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644833--644863	15	2.1	15	93	0	53	12	22	16	48	1.80
646667--646711	21	2.1	21	84	8	56	24	20	4	51	1.66
648918--648943	13	2.0	13	100	0	52	30	15	15	38	1.88
650743--650795	20	2.7	20	82	5	63	37	20	7	33	1.81
650824--650876	19	2.7	20	94	2	90	37	16	16	28	1.91
654178--654250	20	3.6	20	81	3	101	35	13	19	31	1.91
654196--654271	21	3.7	21	78	3	91	40	11	17	30	1.85
654178--654271	41	2.3	41	96	0	170	38	12	18	30	1.88
654310--654335	13	2.0	13	100	0	52	38	15	15	30	1.88
658399--658429	15	2.1	15	93	0	53	48	16	22	12	1.80

Tables:   1   2   3   4   5