genome.fa.s289.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold289
Parameters: 2 7 7 80 10 50 1000
Length:  700734

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 503 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315872--315897	13	2.0	13	100	0	52	30	15	15	38	1.88
315957--316029	20	3.6	20	81	3	101	31	19	13	35	1.91
315936--316029	41	2.3	41	96	0	170	30	18	12	38	1.88
315936--316011	21	3.7	21	78	3	91	30	17	11	40	1.85
318420--318458	13	3.0	13	96	0	69	35	15	17	30	1.91
318444--318522	20	3.7	20	75	18	70	45	15	13	25	1.83
324629--324654	13	2.0	13	100	0	52	30	15	15	38	1.88
324714--324786	20	3.6	20	81	3	101	31	19	13	35	1.91
324693--324786	41	2.3	41	96	0	170	30	18	12	38	1.88
324693--324768	21	3.7	21	78	3	91	30	17	11	40	1.85
326639--326936	81	3.7	81	83	2	330	33	10	26	29	1.90
326643--326936	163	1.8	163	81	2	376	34	10	26	29	1.89
335325--335528	50	4.1	50	92	0	309	29	19	19	31	1.96
339749--339856	50	2.2	50	93	0	180	31	20	16	31	1.95
340616--340641	13	2.0	13	100	0	52	38	15	15	30	1.88
340693--340745	20	2.6	21	84	3	72	30	15	15	39	1.87
340733--340761	13	2.2	13	100	0	58	37	13	17	31	1.89
340747--340797	20	2.5	20	87	0	66	33	15	15	35	1.90
343060--343101	22	2.0	20	86	13	59	42	7	19	30	1.78
343071--343111	22	1.9	22	85	5	57	48	4	17	29	1.67
347796--347826	9	3.4	9	95	0	53	25	35	0	38	1.56
349509--349559	21	2.5	21	81	9	61	29	11	15	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365719--365787	1	69.0	1	73	0	57	86	10	1	1	0.69
365719--365777	9	6.2	9	85	14	75	88	10	1	0	0.60
365719--365787	10	6.7	10	87	11	95	86	10	1	1	0.69
366977--367451	28	16.5	28	84	4	527	28	29	17	24	1.98
366977--367477	58	8.6	58	85	4	620	28	29	17	24	1.98
366977--367451	86	5.5	86	84	5	609	28	29	17	24	1.98
368383--368439	20	2.8	20	91	0	96	29	15	10	43	1.80
371975--371999	11	2.3	11	100	0	50	64	8	20	8	1.46
372493--372536	2	22.0	2	95	0	79	47	0	0	52	1.00
375575--375604	2	15.0	2	92	0	51	50	3	0	46	1.18
377874--377967	20	4.7	19	80	7	89	28	17	12	41	1.86
377875--377967	40	2.3	40	88	0	141	29	17	12	40	1.86
379108--379133	13	2.0	13	100	0	52	30	15	15	38	1.88
379193--379245	20	2.6	21	82	8	65	28	16	16	37	1.91
379233--379257	13	1.9	13	100	0	50	36	16	16	32	1.90
379811--379855	22	2.0	22	91	8	74	35	31	0	33	1.58
379844--379940	48	2.0	48	97	0	185	30	22	2	44	1.64
386299--386332	3	11.3	3	93	0	59	29	35	0	35	1.58
387952--388014	19	3.6	19	76	24	84	25	15	19	39	1.91
387939--388014	32	2.4	32	97	0	143	27	15	17	39	1.90
387971--387996	13	2.0	13	100	0	52	30	15	15	38	1.88
388056--388108	20	2.6	21	82	8	65	28	16	16	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388096--388120	13	1.9	13	100	0	50	36	16	16	32	1.90
390366--390483	51	2.3	52	82	2	132	27	27	13	31	1.94
390498--390664	79	2.1	79	87	2	237	28	25	14	31	1.95
391287--392751	734	2.0	726	93	2	2506	32	19	23	24	1.98
398399--398449	20	2.5	21	75	9	52	35	17	7	39	1.79
400034--400063	2	15.0	2	100	0	60	50	0	50	0	1.00
402474--402542	6	12.2	6	79	18	69	43	0	0	56	0.99
402479--402572	16	5.8	16	75	21	88	41	1	0	57	1.06
405684--405712	15	2.0	15	93	6	51	58	0	0	41	0.98
405712--405749	8	4.1	9	81	18	51	36	0	0	63	0.95
405712--405795	28	3.0	28	72	21	79	38	1	0	60	1.04
405685--405795	55	2.0	55	81	10	129	42	0	0	56	1.05
405716--405754	20	2.0	19	90	5	60	38	0	0	61	0.96
407559--407594	2	18.0	2	100	0	72	50	0	0	50	1.00
411796--411835	21	2.0	21	90	5	64	57	10	10	22	1.61
412744--412820	20	3.8	20	85	0	118	44	12	11	31	1.79
413502--413682	48	3.8	48	89	2	274	36	16	25	20	1.94
413829--414462	28	21.8	28	78	11	455	22	17	30	29	1.96
413829--414124	142	2.1	140	89	5	445	22	16	30	29	1.96
414025--414311	32	9.3	32	86	4	301	19	17	30	32	1.95
414368--414490	28	4.5	27	76	9	124	30	14	31	23	1.94
419605--419681	20	3.8	20	86	6	111	40	12	15	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426291--426339	21	2.2	23	82	7	57	53	6	2	38	1.38
427519--427566	14	3.5	14	88	2	71	0	6	6	87	0.67
431865--431913	25	2.0	25	84	8	64	36	8	2	53	1.43
433155--433187	12	2.8	12	95	4	59	36	0	6	57	1.23
433764--433861	25	4.1	23	74	16	83	35	7	2	55	1.39
435205--435230	2	13.0	2	100	0	52	50	0	0	50	1.00
435852--435916	19	3.4	19	76	19	64	63	0	0	36	0.95
436595--436666	16	4.1	16	72	19	63	36	1	0	62	1.04
437700--437854	58	2.7	57	74	18	146	57	0	0	41	1.03
437801--437897	25	4.0	25	69	20	80	59	0	0	40	0.97
438378--438476	34	2.8	36	75	13	105	40	1	0	58	1.05
438388--438477	16	6.3	14	68	26	55	40	1	0	58	1.05
440464--440502	10	3.9	10	83	9	53	71	0	25	2	0.98
440497--440554	18	3.2	18	87	0	80	53	0	39	6	1.28
440497--440554	6	9.7	6	94	0	71	53	0	39	6	1.28
441962--442037	32	2.4	31	89	6	116	36	3	6	52	1.46
441962--442048	16	5.4	16	71	0	66	37	3	5	52	1.42
443081--443117	16	2.2	16	90	4	56	35	0	5	59	1.20
443633--443684	14	3.4	14	73	19	50	46	0	1	51	1.12
449174--449215	16	2.4	19	84	15	63	35	4	0	59	1.19
449177--449220	17	2.4	19	81	11	56	36	4	0	59	1.18
450340--450511	81	2.2	81	94	3	305	48	3	5	42	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450580--450648	25	2.7	26	72	14	63	56	1	1	40	1.17
450578--450622	23	2.0	22	86	4	63	57	0	0	42	0.98
451047--451074	1	28.0	1	100	0	56	0	0	0	100	0.00
451400--451447	21	2.4	19	80	13	51	52	2	2	43	1.24
451502--451603	51	2.0	51	98	0	195	57	8	13	19	1.62
451502--451615	51	2.2	51	93	3	185	58	7	13	20	1.59
452831--452892	30	2.1	29	93	3	106	29	3	16	51	1.59
453133--453171	18	2.1	19	90	4	62	51	2	2	43	1.29
454111--454147	2	18.5	2	94	0	65	48	0	2	48	1.15
457895--457948	19	2.7	21	82	5	76	40	12	14	31	1.84
463547--463616	33	2.1	34	84	7	90	34	12	18	34	1.89
469731--469758	13	2.2	13	100	0	56	28	14	14	42	1.84
469873--469917	22	2.0	22	82	8	54	28	22	0	48	1.50
472217--472273	19	2.9	19	84	2	78	31	19	17	31	1.95
476361--476608	30	8.0	30	88	6	327	23	30	15	29	1.96
476361--476608	62	4.0	60	86	8	327	23	30	15	29	1.96
476370--477901	34	47.8	33	73	12	661	21	29	12	36	1.90
476525--477901	34	42.8	32	74	14	977	21	29	11	37	1.89
476555--477354	95	8.4	94	79	11	563	21	29	11	36	1.89
476901--477381	192	2.5	188	83	7	578	21	29	11	37	1.89
477123--477800	95	7.1	94	78	11	617	21	28	11	38	1.88
477382--477434	27	2.0	27	84	0	70	22	28	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477058--477800	195	3.8	195	82	7	776	21	28	11	38	1.88
477579--477732	27	5.1	27	72	18	92	21	29	11	37	1.89
477610--477901	69	4.4	69	72	13	234	19	31	11	36	1.88
477639--477767	62	2.1	62	86	5	181	20	29	11	37	1.88
477750--477870	35	3.5	35	86	1	147	14	35	11	38	1.83
477898--478493	49	12.9	49	73	14	417	26	24	17	31	1.97
478062--478198	39	3.3	39	70	18	114	28	24	20	27	1.99
477906--478344	175	2.5	176	84	3	558	26	24	17	30	1.97
477906--478441	88	5.9	88	83	5	563	26	24	18	31	1.97
478261--478602	49	6.8	50	75	7	248	25	23	16	34	1.95

Tables:   1   2   3   4   5